View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9868_low_25 (Length: 272)
Name: NF9868_low_25
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_25 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 2448444 - 2448686
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
2448444 |
agaataatggaaatgataaaaagagttccaaaaatagattctgaaaatatggaaggtgaaattctagagaaagtcttgggggaagttgaattcaaccatg |
2448543 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2448544 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttgaaggttccatcaggaaaaacagtggcattagtaggagaaagtgg |
2448643 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448644 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
2448686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 2572896 - 2572654
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2572896 |
agaataatggaagtgataaaaagagttccaaagatagattctgaaaacatggaaggtgaaattatagagaaagtcttgggggaagttgagttcaaccatg |
2572797 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2572796 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttgaaggttccatcaggaaaaacagtggcattggtaggaggaagtgg |
2572697 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2572696 |
ttcaggaaaatcaacagttgtatcacttttacaaagattttat |
2572654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 2586162 - 2586404
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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|
| T |
2586162 |
agaataatggaagtgataaaaagagttccaaagattgattccgaaaacatggaaggtgaaattatagagaaagtgtcgggggaagttgaattcaaccatg |
2586261 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2586262 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaaagatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
2586361 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2586362 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
2586404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 2432577 - 2432819
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
|||||||||||| |||||||| | |||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
2432577 |
agaataatggaagtgataaaaagagttccaacgatagattctgaaaacatggaaggtgaaattatagagaaagtcttgggggaagttgagttcaacaatg |
2432676 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2432677 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
2432776 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
2432777 |
ttcaggaaaatcaacggttgtatcacttttacaaagattttat |
2432819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 2677732 - 2677490
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| ||||||||||| || |||||||||||| |||||||||| || |||||||||||||||||||||| |
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|
| T |
2677732 |
agaataatggaaatgataaaaagagttccaaagatagattctgaaaacatcgaaggtgaaattctagagaaagtcttaggggaagttgagttcaaccatg |
2677633 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
2677632 |
ttgaatttgtgtatccatcaagaccagaaagtgtggtcctaaatgatttttgtttaaaggttccatcagggaaaacggttgcattagtaggaggaagtgg |
2677533 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677532 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
2677490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 2645294 - 2645052
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||||||||| |||||||| || ||| ||||||||||||| || |||||||| || ||||||| |
|
|
| T |
2645294 |
agaataatggatgtgataaatagagttccaaagattgattctgaaaacatggaaggagagattctagagaaagttttaggagaagttgaatttaaccatg |
2645195 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2645194 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttgaaggttccatcaggaaaaacagtggcattagtaggagaaagtgg |
2645095 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2645094 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
2645052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 2619852 - 2620094
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
|||||||||||||||||||| | ||||||| || |||||| |||| ||||||||||||||| |||||||||| | ||| ||||||| |||||||||| |
|
|
| T |
2619852 |
agaataatggaaatgataaatagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaattcaaccatg |
2619951 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
2619952 |
ttgaatttgtgtatccatcaagaccagaaagtgtggtcctaaatgatttttgtttaaaggttccatcagggaaaacggttgcattagtaggaggaagtgg |
2620051 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2620052 |
ttcaggaaaatcaacagttgtatcacttttacaaagattttat |
2620094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 2600462 - 2600232
Alignment:
| Q |
16 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2600462 |
agaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattctagagaaagtcttgggggaagttgagttcaacaatg |
2600363 |
T |
|
| Q |
116 |
ttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| | | ||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
2600362 |
ttgaatttgtgtatccatcaagaccagaaagtgtggtcctaaagtgt------------ggtccatcagggaaaacggttgcattagtaggaggaagtgg |
2600275 |
T |
|
| Q |
216 |
ttcaggaaaatcaacagttgtatcacttttgcaaagattttat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2600274 |
ttcaggaaaatcaacagttgtatcacttttacaaagattttat |
2600232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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