View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_27 (Length: 270)

Name: NF9868_low_27
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_27
NF9868_low_27
[»] chr8 (20 HSPs)
chr8 (1-255)||(468094-468349)
chr8 (156-219)||(24184582-24184645)
chr8 (151-216)||(30157746-30157811)
chr8 (156-219)||(44362291-44362354)
chr8 (157-219)||(13015424-13015486)
chr8 (154-219)||(27924481-27924546)
chr8 (147-219)||(4366319-4366391)
chr8 (152-215)||(18087247-18087309)
chr8 (157-219)||(16938900-16938962)
chr8 (156-218)||(42563193-42563255)
chr8 (156-209)||(26491455-26491508)
chr8 (156-213)||(40891899-40891956)
chr8 (157-216)||(8457553-8457612)
chr8 (156-219)||(33986859-33986922)
chr8 (166-209)||(37940455-37940498)
chr8 (156-219)||(41013246-41013309)
chr8 (156-219)||(34127660-34127724)
chr8 (156-217)||(7662309-7662370)
chr8 (127-216)||(10457311-10457400)
chr8 (156-212)||(44801472-44801528)
[»] chr7 (6 HSPs)
chr7 (152-219)||(40417686-40417753)
chr7 (128-219)||(6221095-6221187)
chr7 (156-219)||(45879114-45879177)
chr7 (147-219)||(9047088-9047160)
chr7 (152-219)||(30898096-30898163)
chr7 (156-216)||(30198320-30198380)
[»] chr4 (21 HSPs)
chr4 (156-218)||(12763427-12763489)
chr4 (128-216)||(36619931-36620019)
chr4 (156-213)||(34015725-34015782)
chr4 (154-219)||(19466030-19466095)
chr4 (156-213)||(36860295-36860352)
chr4 (152-216)||(53374997-53375061)
chr4 (156-219)||(1955291-1955354)
chr4 (152-216)||(21139319-21139383)
chr4 (156-219)||(32056311-32056374)
chr4 (160-219)||(42915746-42915805)
chr4 (156-219)||(47742791-47742854)
chr4 (156-219)||(48743466-48743529)
chr4 (156-219)||(50498876-50498939)
chr4 (157-219)||(49081302-49081364)
chr4 (156-213)||(20922693-20922750)
chr4 (152-209)||(26194536-26194593)
chr4 (162-203)||(33033260-33033301)
chr4 (156-214)||(41736700-41736760)
chr4 (156-213)||(47089212-47089269)
chr4 (156-219)||(10215784-10215847)
chr4 (183-219)||(26206122-26206157)
[»] chr2 (9 HSPs)
chr2 (147-219)||(8329643-8329715)
chr2 (163-219)||(33635700-33635756)
chr2 (156-219)||(45716497-45716560)
chr2 (152-219)||(36100999-36101062)
chr2 (166-219)||(7820037-7820090)
chr2 (125-217)||(20493664-20493755)
chr2 (185-219)||(25749700-25749734)
chr2 (128-219)||(9620633-9620725)
chr2 (156-216)||(28580428-28580488)
[»] chr1 (10 HSPs)
chr1 (147-219)||(963946-964018)
chr1 (156-213)||(43638397-43638454)
chr1 (166-219)||(14171826-14171879)
chr1 (180-219)||(26127286-26127325)
chr1 (152-219)||(35538952-35539019)
chr1 (156-219)||(6395466-6395529)
chr1 (156-219)||(35285474-35285537)
chr1 (156-219)||(49066001-49066063)
chr1 (147-213)||(31647626-31647692)
chr1 (157-213)||(49372562-49372617)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-213)||(185503-185560)
[»] chr5 (13 HSPs)
chr5 (154-219)||(14148320-14148385)
chr5 (158-216)||(19366809-19366867)
chr5 (157-219)||(36301222-36301284)
chr5 (156-209)||(26296444-26296497)
chr5 (154-219)||(26440083-26440148)
chr5 (156-211)||(24181454-24181509)
chr5 (166-219)||(8590126-8590179)
chr5 (171-219)||(932131-932179)
chr5 (147-219)||(19336832-19336903)
chr5 (154-216)||(41868833-41868895)
chr5 (156-213)||(29144379-29144436)
chr5 (157-209)||(5412009-5412061)
chr5 (157-209)||(5471543-5471595)
[»] chr3 (17 HSPs)
chr3 (157-219)||(9099175-9099237)
chr3 (157-219)||(23086444-23086506)
chr3 (162-218)||(40892801-40892857)
chr3 (156-219)||(38832957-38833020)
chr3 (156-219)||(55142343-55142406)
chr3 (157-219)||(23089299-23089361)
chr3 (154-219)||(51490211-51490276)
chr3 (156-215)||(50662482-50662541)
chr3 (152-206)||(49980311-49980365)
chr3 (152-216)||(32497834-32497898)
chr3 (128-219)||(52762926-52763018)
chr3 (153-216)||(27659760-27659823)
chr3 (156-219)||(53653115-53653177)
chr3 (156-213)||(31064577-31064634)
chr3 (157-213)||(23160672-23160728)
chr3 (179-219)||(29793450-29793490)
chr3 (160-216)||(39149138-39149194)
[»] chr6 (6 HSPs)
chr6 (156-205)||(2667086-2667135)
chr6 (147-205)||(2656422-2656480)
chr6 (147-209)||(12109336-12109398)
chr6 (157-219)||(31330522-31330584)
chr6 (152-219)||(29608447-29608514)
chr6 (152-219)||(646596-646665)
[»] scaffold1095 (1 HSPs)
scaffold1095 (157-219)||(920-982)
[»] scaffold0275 (1 HSPs)
scaffold0275 (157-219)||(377-439)
[»] scaffold0191 (1 HSPs)
scaffold0191 (177-218)||(4564-4605)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 468349 - 468094
Alignment:
Q  1 atataattaattcgattagacatttttctgtctacctcctagtggtgccaacgttattaatgatgggcggggagacaacttttattactccatctatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  468349 atataattaattcgattagacatttttctgtctacctcctagtggtgccaacgttattaatgatgggcggggagacaacttttattactccatctatttg 468250  T
Q  101 aagttaggtgtctcttttaagtttgaaaaatgttaacgagtgtcttgggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtatt 200  Q
    ||||||||||| || ||||||||||||||| |||||||||||||| || |||||||||||  |||||||||| || ||||||||||| ||||||| ||||    
T  468249 aagttaggtgtttcatttaagtttgaaaaaagttaacgagtgtctcggaaaacttgttaaaaaattataaaataaaatattgttttgaaaattgtctatt 468150  T
Q  201 ctactttttgaaagttaaataatg-taaattgtacctttctttctacttttagcac 255  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  468149 ctactttttgaaagttaaataatgcaaaattgtacctttctttctacttttagcac 468094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 24184645 - 24184582
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||| |||||    
T  24184645 gttaaagaattataaaagaaaattttgttttggaaattgtgtattctgctttttgaaaattaaa 24184582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 30157811 - 30157746
Alignment:
Q  151 aacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||||||||||  |||||| | ||||| | ||||||||||||||||||||||||||||||||    
T  30157811 aacttgttaaggaatcgtaaaaggaaatattttcttggaaattgtgtattctactttttgaaagtt 30157746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 44362291 - 44362354
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||  | ||||||| ||| ||||||||||||||| |||||||||||||||    
T  44362291 gttaaggaattataaaaagaaatattgtattgaaaattgtgtattctattttttgaaagttaaa 44362354  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 13015486 - 13015424
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| ||||||||||| | ||||||| ||| ||||||||||||||||||||||||| |||||    
T  13015486 ttaagaaattataaaagtaaatattgtattgcaaattgtgtattctactttttgaaaattaaa 13015424  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 27924481 - 27924546
Alignment:
Q  154 ttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||| |||||| ||||||| ||||| | ||| ||||| |||||||||||||||||||||||||    
T  27924481 ttgttaaagaattagaaaagaaaatattatcttgaaaattatgtattctactttttgaaagttaaa 27924546  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 4366391 - 4366319
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| |||||||||||||| ||||||  | ||||| ||||| ||||| ||||||||||||||| |||||||||    
T  4366391 gggatacttgttaaggaatcataaaatgaaatattattttgaaaattatgtattctactttttaaaagttaaa 4366319  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 18087309 - 18087247
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagt 215  Q
    |||||||||||||| ||||||| | ||||| | ||| |||||||||||||||||||||||||||    
T  18087309 acttgttaaggaat-ataaaaggaaatattctcttgaaaattgtgtattctactttttgaaagt 18087247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 16938900 - 16938962
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||| || | ||| ||| ||| ||||||||||||||||||||| |||||||||    
T  16938900 ttaaggaattataagaggaaatagtgtcttgaaaattgtgtattctacttttttaaagttaaa 16938962  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 42563193 - 42563255
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaa 218  Q
    |||||||||||||||||| | ||||||| ||| ||||| || |||||| ||||||||||||||    
T  42563193 gttaaggaattataaaaggaaatattgtattgaaaattctgcattctattttttgaaagttaa 42563255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 26491455 - 26491508
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    ||||| |||||||||||| | ||||||| ||||||||||||| |||||||||||    
T  26491455 gttaaagaattataaaaggaaatattgtattggaaattgtgtgttctacttttt 26491508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 40891899 - 40891956
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||||||||||||||||| ||||| |||||  ||||||||||| || |||||||||    
T  40891899 gttaaggaattataaaagaaaatatttttttgataattgtgtattttattttttgaaa 40891956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 8457612 - 8457553
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    ||||||||||| ||||| | ||||| | ||||||||||||||||||| ||||| ||||||    
T  8457612 ttaaggaattagaaaaggaaatattttcttggaaattgtgtattctattttttaaaagtt 8457553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 33986859 - 33986922
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||| | |||||||||| ||||| | ||  |||||||||||| ||||||||||||||||||    
T  33986859 gttaagggaatataaaagaaaatattctctttaaaattgtgtattttactttttgaaagttaaa 33986922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 37940455 - 37940498
Alignment:
Q  166 tataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    |||||||||| ||||| | |||||||||||||||||||||||||    
T  37940455 tataaaagaaaatattatcttggaaattgtgtattctacttttt 37940498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 41013246 - 41013309
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||  |||||| || |||| ||| |||||||||||||| ||| ||||||||||||    
T  41013246 gttaaggaattaataaagaaaattttgtcttgaaaattgtgtattcttcttcttgaaagttaaa 41013309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 34127660 - 34127724
Alignment:
Q  156 gttaaggaattataaaag--aatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||| |||||  |||||||| | ||||||||||||||||||| ||||| |||||||||    
T  34127660 gttaaggaattagaaaaggaaatatatt-tcttggaaattgtgtattctattttttaaaagttaaa 34127724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 7662370 - 7662309
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtta 217  Q
    |||||| |||||| |||| | ||||| |||||||||||||||||||||  |||| |||||||    
T  7662370 gttaagaaattattaaaggaaatatttttttggaaattgtgtattctatattttaaaagtta 7662309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 10457400 - 10457311
Alignment:
Q  127 aaaatgttaacgagtgtcttgggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    ||||||||||| | ||| | |||  ||||||||||  | |||||||  | ||||| |||||||||||||| ||| |||||||||||||||    
T  10457400 aaaatgttaacaaatgtttcggggcacttgttaagtgaatataaaatgaaatattattttggaaattgtgcattatactttttgaaagtt 10457311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 44801472 - 44801528
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaa 212  Q
    |||||||||||||||||| | || |||| || ||||||||| ||||| |||||||||    
T  44801472 gttaaggaattataaaaggaaattttgtcttagaaattgtgcattctgctttttgaa 44801528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 40417753 - 40417686
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  40417753 acttgttaaggaattataaaagaaaatattgttttggaaattgtgttttctattttttgaaagttaaa 40417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 6221187 - 6221095
Alignment:
Q  128 aaatgttaacgagtg-tcttgggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| |||| ||| |||  ||| |||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||    
T  6221187 aaatgttaactagtgctctcggggcactggttaaggaattataaaaggagatattgtcttggaaattgtatattctactttttgaaagttaaa 6221095  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 45879114 - 45879177
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||| ||||    
T  45879114 gttaaggaattataaaaggaaattttgtcttggaaattgtgtattctactttttgaaaggtaaa 45879177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 9047088 - 9047160
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| ||| |||||||||| ||||||| | || |||| ||| |||||||| ||||||||||||||||||||||    
T  9047088 gggacactggttaaggaatcataaaaggaaattttgtattgaaaattgtggattctactttttgaaagttaaa 9047160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 30898163 - 30898096
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||||||| | ||||| | ||| ||| |||  ||||||||||||||||||||||    
T  30898163 acttgttaaggaattataaaaggaaatattttcttgaaaactgtacattctactttttgaaagttaaa 30898096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 30198320 - 30198380
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||||||| ||||| | ||||| | || |||||||||||||||| ||||| ||||||    
T  30198320 gttaaggaattagaaaaggaaatattttcttagaaattgtgtattctattttttaaaagtt 30198380  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 12763489 - 12763427
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaa 218  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  12763489 gttaaggaattataaaagaaaatattgttttggaaactgtgtattctactttttgaaagttaa 12763427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 36620019 - 36619931
Alignment:
Q  128 aaatgttaacgagtgtcttgggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||||| ||||||  |||  ||||||||||| |||||||||| | ||||||| |||||||||||||||| |||||||| ||||||    
T  36620019 aaatgttaacaagtgtccgggggcacttgttaagggattataaaaggaaatattgtattggaaattgtgtattttactttttaaaagtt 36619931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 34015725 - 34015782
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    ||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  34015725 gttaaagaattataaaagaaaattttgttttggaaattgtatattctactttttgaaa 34015782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 19466030 - 19466095
Alignment:
Q  154 ttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||| |||||||  | ||||| |||||||||||||||||| ||| ||||||||||||||    
T  19466030 ttgttaaggaaatataaaatgaaatatttttttggaaattgtgtattttaccttttgaaagttaaa 19466095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 36860295 - 36860352
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||| ||||||||||  | ||||||| |||||||||||||||||||||||||||||    
T  36860295 gttaagaaattataaaaagaaatattgtattggaaattgtgtattctactttttgaaa 36860352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 53375061 - 53374997
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    ||||||||||| | |||||||| | ||||| | ||||||||||||||||||||||||| ||||||    
T  53375061 acttgttaagggaatataaaaggaaatattctcttggaaattgtgtattctactttttaaaagtt 53374997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 1955291 - 1955354
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| |||||||||||||| ||||||| ||| ||||||| ||||| ||||||| |||||||||    
T  1955291 gttaaagaattataaaagaaaatattgtattgaaaattgtatattcgacttttttaaagttaaa 1955354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 21139383 - 21139319
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||||  ||||||||||||| | ||| | ||| ||||| ||||||||||||||||||||||    
T  21139383 acttgttaataaattataaaagaaaacattatcttgaaaattatgtattctactttttgaaagtt 21139319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 32056374 - 32056311
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||| ||||||||||| | || |||| ||| |||||||||||| |||||||| |||||||||    
T  32056374 gttaagaaattataaaaggaaattttgtcttgaaaattgtgtattttactttttaaaagttaaa 32056311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 42915746 - 42915805
Alignment:
Q  160 aggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||| ||||||| || || |||||||||||||||||| |||||||| ||| |||||    
T  42915746 aggaattacaaaagaaaatgtttttttggaaattgtgtattttactttttaaaacttaaa 42915805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 47742854 - 47742791
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||| | ||||| | |||||| ||||||||| ||| |||| |||||||||    
T  47742854 gttaaggaattataaaaggaaatattatcttggaatttgtgtattatacattttaaaagttaaa 47742791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 48743466 - 48743529
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||| ||||||||||| | ||||||| |||||||||||| |||  ||||||||||| |||||    
T  48743466 gttaagaaattataaaaggaaatattgtattggaaattgtgcatttcactttttgaaaattaaa 48743529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 50498876 - 50498939
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| |||||| |||| || ||||| |||||||||||||||||| || ||||| |||||||||    
T  50498876 gttaaagaattaaaaaataaaatatttttttggaaattgtgtattttatttttttaaagttaaa 50498939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 49081364 - 49081302
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| |||||| ||||| | ||||| ||||| ||||||||||||||| ||||| |||||||||    
T  49081364 ttaaagaattagaaaaggaaatatttttttgaaaattgtgtattctattttttaaaagttaaa 49081302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 20922693 - 20922750
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||||||||||||||||| || || | ||||||||||| |||| ||||||| ||||    
T  20922693 gttaaggaattataaaagaaaatgttttcttggaaattgtatattttacttttcgaaa 20922750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 26194536 - 26194593
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    |||||||||||||||||||||  | ||||| | ||| ||||||||||||| |||||||    
T  26194536 acttgttaaggaattataaaatgaaatattatcttgtaaattgtgtattcaacttttt 26194593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 33033301 - 33033260
Alignment:
Q  162 gaattataaaagaatatattgttttggaaattgtgtattcta 203  Q
    |||||||||||||| ||||| | |||||||||||||||||||    
T  33033301 gaattataaaagaaaatattttcttggaaattgtgtattcta 33033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 41736700 - 41736760
Alignment:
Q  156 gttaaggaattataaaag--aatatattgttttggaaattgtgtattctactttttgaaag 214  Q
    ||||||||||| ||||||  |||||||| |||| |||||| |||||| |||||||||||||    
T  41736700 gttaaggaattgtaaaaggaaatatatttttttagaaattctgtattgtactttttgaaag 41736760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 47089212 - 47089269
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||||||||||||||| | || || | ||| |||||||||||| ||||||||||||    
T  47089212 gttaaggaattataaaaggaaatgttttcttgaaaattgtgtattttactttttgaaa 47089269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 10215847 - 10215784
Alignment:
Q  156 gttaaggaattataaaagaa-tatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||| ||||||||||||| |||| | |||||||||||||||||| || ||||||||| |||||    
T  10215847 gttaagaaattataaaagaaatataat-ttttggaaattgtgtattttattttttgaaatttaaa 10215784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 26206157 - 26206122
Alignment:
Q  183 ttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26206157 ttttggaaattgtgtattctac-ttttgaaagttaaa 26206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 8329643 - 8329715
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| |||||||||||||||||| ||| | ||||| ||||||||||| |||||||||||||||||||||||||    
T  8329643 gggatacttgttaaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagttaaa 8329715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 33635700 - 33635756
Alignment:
Q  163 aattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  33635700 aattataaaagaaaatattgtcttggaaattgtgtattctactttttaaaagttaaa 33635756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 45716560 - 45716497
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||| | ||||||| ||||||||| || ||||||||||||||||||||||    
T  45716560 gttaaggaattataaaaggaaatattgtcttggaaattatggattctactttttgaaagttaaa 45716497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 36100999 - 36101062
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| ||||||||||| | ||||||| ||||||    |||||||||||||||||||||||||    
T  36100999 acttgttaagaaattataaaaggaaatattgtcttggaa----tgtattctactttttgaaagttaaa 36101062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 7820037 - 7820090
Alignment:
Q  166 tataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||| | ||||||| || |||||||| |||||||||||||||||||||||    
T  7820037 tataaaaggaaatattgtcttcgaaattgtatattctactttttgaaagttaaa 7820090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 20493755 - 20493664
Alignment:
Q  125 gaaaaatgttaacgagtgtcttgggaa-acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtta 217  Q
    |||||||||||||||||| | | |||  ||||||||| |||||||||||| | ||||||| |  ||| |||||  |||||||||||||||||||    
T  20493755 gaaaaatgttaacgagtgcccttggagcacttgttaacgaattataaaaggaaatattgtatgagaatttgtg--ttctactttttgaaagtta 20493664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 25749700 - 25749734
Alignment:
Q  185 ttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||||||||| |||||||||||||||    
T  25749700 ttggaaattgtgtattctattttttgaaagttaaa 25749734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 9620725 - 9620633
Alignment:
Q  128 aaatgttaacgagtg-tcttgggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| |||| |||  ||| |||||||||||||||||||||  | ||||  ||||  ||||||| ||||||||||||| ||| |||||    
T  9620725 aaatgttaacaagtgctctcaggacacttgttaaggaattataaaaagaaatatatttttaaaaattgtatattctactttttaaaaattaaa 9620633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 28580488 - 28580428
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    ||||| |||||||||||||| ||||| || | ||||||||||||| || ||||| ||||||    
T  28580488 gttaaagaattataaaagaaaatatttttatagaaattgtgtattttattttttaaaagtt 28580428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 963946 - 964018
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| ||||||||||||||||||| || | ||||||| ||||||||||||||||||||||||| |||||||||    
T  963946 gggacacttgttaaggaattataataggaaatattgtcttggaaattgtgtattctactttttcaaagttaaa 964018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 43638454 - 43638397
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  43638454 gttaaggaattataaaaggaaatattgtcttgaaaattgtgtattctactttttgaaa 43638397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 14171826 - 14171879
Alignment:
Q  166 tataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||    
T  14171826 tataaaagaaaatattgtcttgaaaattgtgtattttactttttgaaagttaaa 14171879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 26127286 - 26127325
Alignment:
Q  180 ttgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  26127286 ttgtcttggaaattgtgtattctactttttgaaagttaaa 26127325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 35538952 - 35539019
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| ||||||||||  | ||||||||||||||| |||||||| || ||||| |||||||||    
T  35538952 acttgttaagaaattataaaatgaaatattgttttggaaactgtgtattttattttttaaaagttaaa 35539019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6395466 - 6395529
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||| ||  |||| |||||||||    
T  6395466 gttaaggaattattaaagaaaatatttttttgaaaattgtgtattttatgttttaaaagttaaa 6395529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 35285474 - 35285537
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||| ||||||| || ||||||| || ||||||||||||| || ||||| |||||||||    
T  35285474 gttaaggaaatataaaataaaatattgtattagaaattgtgtattttattttttaaaagttaaa 35285537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 49066063 - 49066001
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||| ||||||||||||| || || |||||||||||||||||| | |||||| |||||||||    
T  49066063 gttaagaaattataaaagaaaat-ttattttggaaattgtgtatttttctttttaaaagttaaa 49066001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 31647626 - 31647692
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||| ||| |||||||||||||||||||| || || ||| | ||||| |||||| ||||||||||||    
T  31647626 gggacactagttaaggaattataaaagaaaatgttttttcgaaaattctgtattttactttttgaaa 31647692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 49372617 - 49372562
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    ||||||||||||||||||| ||||| ||||| |||||| ||||| || |||||||||    
T  49372617 ttaaggaattataaaagaaaatatt-ttttgaaaattgggtattttattttttgaaa 49372562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 185560 - 185503
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  185560 gttaaggaattataaaagaaaatattgtattgaaaattgtgtattctactttttgaaa 185503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 14148385 - 14148320
Alignment:
Q  154 ttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||||  | ||||| | |||||||||||||||||||||||||||||||||||    
T  14148385 ttgttaaggaattataaaaagacatattatcttggaaattgtgtattctactttttgaaagttaaa 14148320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 19366867 - 19366809
Alignment:
Q  158 taaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||    
T  19366867 taaggaattataaaaggaaacattgtcttggaaattgtgtattctactttttgaaagtt 19366809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 36301222 - 36301284
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||| ||| |||| |||||||||    
T  36301222 ttaaggaattataaaagaaaatattattttagaaattgtgtattttacattttaaaagttaaa 36301284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 26296497 - 26296444
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    ||||| |||||||||||| | ||||||| |||||||||||||||||||||||||    
T  26296497 gttaaagaattataaaaggaaatattgtattggaaattgtgtattctacttttt 26296444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 26440083 - 26440148
Alignment:
Q  154 ttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||||  | ||||  |||| |||||||||||||||||||||| |||||||||    
T  26440083 ttgttaaggaattataaaatgaaatatctttttagaaattgtgtattctactttttaaaagttaaa 26440148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 24181454 - 24181509
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttga 211  Q
    |||||||||||||||||| | ||||||| ||| |||||||||||| ||||||||||    
T  24181454 gttaaggaattataaaaggaaatattgtattgaaaattgtgtattttactttttga 24181509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 8590126 - 8590179
Alignment:
Q  166 tataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| ||||| |||||||||||||||||| ||| |||| |||||||||    
T  8590126 tataaaagaaaatatttttttggaaattgtgtattttaccttttaaaagttaaa 8590179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 932131 - 932179
Alignment:
Q  171 aagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| ||||||| |||||||||||||||| |||||||| |||||||||    
T  932131 aagaaaatattgtattggaaattgtgtattttacttttttaaagttaaa 932179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 19336903 - 19336832
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| |||||||||| ||||||||||  | ||||| | ||  |||||||||||||||||||||||||||||||    
T  19336903 gggacacttgttaagaaattataaaatga-atattttcttaaaaattgtgtattctactttttgaaagttaaa 19336832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 41868895 - 41868833
Alignment:
Q  154 ttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    ||||| |||||||||||||| | ||||| | || ||||||||||||| |||||||| ||||||    
T  41868895 ttgtttaggaattataaaaggaaatattatcttagaaattgtgtattttactttttaaaagtt 41868833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 29144436 - 29144379
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||| ||||||||||| | ||||| |||||||||||||||||| || ||| |||||    
T  29144436 gttaagaaattataaaaggaaatatttttttggaaattgtgtattttattttctgaaa 29144379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 5412061 - 5412009
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    |||||||||| |||||||| ||||| ||| | |||||||||||| ||||||||    
T  5412061 ttaaggaattctaaaagaaaatattttttcgaaaattgtgtattttacttttt 5412009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 5471595 - 5471543
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    |||| |||||||||||||| ||||| | ||  |||||||||||||||||||||    
T  5471595 ttaaagaattataaaagaaaatattatcttaaaaattgtgtattctacttttt 5471543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 9099237 - 9099175
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||||||| | ||||||| |||||||| |||||||| |||||||||||||||||    
T  9099237 ttaaggaattataaaaggaaatattgtattggaaatcgtgtattcaactttttgaaagttaaa 9099175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 23086444 - 23086506
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||    
T  23086444 ttaaggaattataaaaaaaaatattgttttagaaattgtgtattatactttttaaaagttaaa 23086506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 40892801 - 40892857
Alignment:
Q  162 gaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaa 218  Q
    |||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||    
T  40892801 gaattataaaaggaaatattttcttggaaattgtgtattctactttttgaaagttaa 40892857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 38832957 - 38833020
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||| ||||||||||| | ||||||| ||| ||||| |||||||||||||||||||||||||    
T  38832957 gttaagaaattataaaaggaaatattgtattgaaaattatgtattctactttttgaaagttaaa 38833020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 55142406 - 55142343
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||  |||||||| |||||    
T  55142406 gttaaagaattataaaagaaaatatttttttggaaattgtgtattctatgttttgaaatttaaa 55142343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 23089361 - 23089299
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| |||||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||    
T  23089361 ttaaagaattataaaagaaaattttgttttagaaattgtgtattatactttttaaaagttaaa 23089299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 51490276 - 51490211
Alignment:
Q  154 ttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||||||||||||||| ||||| | ||| ||||| |||||| ||| ||||||||||||||    
T  51490276 ttgttaaggaattataaaagaaaatattctcttgaaaattttgtattataccttttgaaagttaaa 51490211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 50662541 - 50662482
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagt 215  Q
    ||||||||||||||||| || ||||| | ||||||||| | |||||||||||||||||||    
T  50662541 gttaaggaattataaaataaaatattatattggaaattttctattctactttttgaaagt 50662482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 49980311 - 49980365
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactt 206  Q
    ||||||||||||||||| |||| | ||||| | ||||||||||||||||||||||    
T  49980311 acttgttaaggaattatgaaaggaaatattatcttggaaattgtgtattctactt 49980365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 32497898 - 32497834
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||||| ||||||||||| | ||||| | | | |||||||||||| |||||||||||||||    
T  32497898 acttgttaagaaattataaaagtaaatattatctcgaaaattgtgtattatactttttgaaagtt 32497834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 52762926 - 52763018
Alignment:
Q  128 aaatgttaacgagtgtcttgggaaacttg-ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| |||||| | ||| ||||| ||||||| ||||||||  | || |||| | ||||||| |||||||||||| ||||||||||||    
T  52762926 aaatgttaaccagtgtcctcggacacttggttaaggagttataaaaagaaattttgtgtcggaaattatgtattctacttcttgaaagttaaa 52763018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 27659823 - 27659760
Alignment:
Q  153 cttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||| |||||||||||  | ||| | ||||| ||||||||||||||| ||||||||||||    
T  27659823 cttgttaatgaattataaaatgaaataattttttgaaaattgtgtattctattttttgaaagtt 27659760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 53653115 - 53653177
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| |||||||||||||| || || | ||| ||||||||||||||||||||| |||||||||    
T  53653115 gttaaagaattataaaagaaaattttatattgaaaattgtgtattctacttttt-aaagttaaa 53653177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 31064634 - 31064577
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    |||||||||||||||||  | | ||| ||||| |||||||||||| ||||||||||||    
T  31064634 gttaaggaattataaaaagaaacatttttttgaaaattgtgtattttactttttgaaa 31064577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 23160728 - 23160672
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaa 213  Q
    ||||||||||||||||||| ||||  | | ||||||||| |||| ||||||||||||    
T  23160728 ttaaggaattataaaagaaaatatgttctcggaaattgtatattttactttttgaaa 23160672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 29793450 - 29793490
Alignment:
Q  179 attgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| |||||||||||||||| |||||||| |||||||||    
T  29793450 attgtcttggaaattgtgtattttactttttaaaagttaaa 29793490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 39149138 - 39149194
Alignment:
Q  160 aggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagtt 216  Q
    |||||||| |||||||| | || |||| |||||||||||||||| ||||| ||||||    
T  39149138 aggaattagaaaagaatttttttttttagaaattgtgtattctattttttaaaagtt 39149194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 2667086 - 2667135
Alignment:
Q  156 gttaaggaattataaaagaatatattgttttggaaattgtgtattctact 205  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  2667086 gttaaggaattataaaagaaaatattgtattggaaattgtgtattctact 2667135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 2656422 - 2656480
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctact 205  Q
    |||| ||| |||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  2656422 gggacactggttaaggaattataaaagaaaatattatattggaaattgtgtattctact 2656480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 12109398 - 12109336
Alignment:
Q  147 gggaaacttgttaaggaattataaaagaatatattgttttggaaattgtgtattctacttttt 209  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||||||||  ||||| |||||||    
T  12109398 gggacacttgttaagaaattataaaagaaaatatttttttggaaattggctattcaacttttt 12109336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 31330522 - 31330584
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||| ||||||||| || | || |||| ||| |||||||||||||||||||||||||||||||    
T  31330522 ttaaagaattataagaggaaattttgtcttgaaaattgtgtattctactttttgaaagttaaa 31330584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 29608447 - 29608514
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||| ||||| ||||| | ||||  ||||||||||| ||||||||| ||||| |||||||||    
T  29608447 acttgttaagaaattaaaaaaggaaatatatttttggaaattatgtattctattttttaaaagttaaa 29608514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 646665 - 646596
Alignment:
Q  152 acttgttaaggaattataaaagaatatattgtttt--ggaaattgtgtattctactttttgaaagttaaa 219  Q
    |||||||||  ||||||||||||| ||||| ||||  |||||||| | |||||||||||||||| |||||    
T  646665 acttgttaaaaaattataaaagaaaatatttttttctggaaattgcgcattctactttttgaaaattaaa 646596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 982 - 920
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||||||||||||||| | || |||||||| |||| ||||| |||||| |||||||||||||    
T  982 ttaaggaattataaaaggaaattttgttttgaaaatggtgtagtctactgtttgaaagttaaa 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 377 - 439
Alignment:
Q  157 ttaaggaattataaaagaatatattgttttggaaattgtgtattctactttttgaaagttaaa 219  Q
    ||||| ||||||||||||| || |||||||| ||| |||||| |||||| |||||||||||||    
T  377 ttaagaaattataaaagaaaattttgttttgaaaactgtgtagtctactgtttgaaagttaaa 439  T

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Target: scaffold0191 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 4564 - 4605
Alignment:
Q  177 atattgttttggaaattgtgtattctactttttgaaagttaa 218  Q
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T  4564 atattgtattgaaaattgtgtattccactttttgaaagttaa 4605  T

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