View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_28 (Length: 269)
Name: NF9868_low_28
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 21444910 - 21445150
Alignment:
| Q |
19 |
agcaaaaaccaaaatggaaaccagtataacaataagatatattttttggatattattcatgcaaaaacgataccttaaagttgaccttgaccctagaaat |
118 |
Q |
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| T |
21444910 |
agcaaaaaccaaaatggaaaccagtataacaataagatatattttttggatattattcatgcaaaaacgataccttaaagttgaccttgaccctagaaat |
21445009 |
T |
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| Q |
119 |
ctaaaaaagttttggtcactttagtatttacatgcaggacattgtaatttgtaatacagcttattgaaaaagctaccnnnnnnnccaaattctgtttggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21445010 |
ctaaaaaagttttggtcactttagtatttacatgcaggacattgtaatttgtaatacagcttattgaaaaagctaccaaaaaaaccaaattctgtttggt |
21445109 |
T |
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| Q |
219 |
tgtgataattgtattaaagagagaataccctactacctttg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445110 |
tgtgataattgtattaaagagagaataccctactacctttg |
21445150 |
T |
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