View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_3 (Length: 640)

Name: NF9868_low_3
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_3
NF9868_low_3
[»] chr3 (2 HSPs)
chr3 (1-622)||(50834419-50835040)
chr3 (1-622)||(50840813-50841434)
[»] chr8 (3 HSPs)
chr8 (338-622)||(11729626-11729910)
chr8 (338-622)||(23739938-23740222)
chr8 (19-47)||(43618669-43618697)


Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 50834419 - 50835040
Alignment:
Q  1 cttcttctgatcttcaacacacaaaaacccttcttcttatgccctcacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834419 cttcttctgatcttcaacacacaaaaacccttcttcttatgccctcacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaattt 50834518  T
Q  101 cttcatttggagttttgaatgtcttttattgactttgcattagtgttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834519 cttcatttggagttttgaatgtcttttattgactttgcattagtgttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgta 50834618  T
Q  201 cctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834619 cctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaat 50834718  T
Q  301 attctgtttcagagttataaatatattctggataatttgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834719 attctgtttcagagttataaatatattctggataatttgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcact 50834818  T
Q  401 atccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattannnnnnng 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  50834819 atccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattatttttttg 50834918  T
Q  501 ggtcatgaatgatgagtacaaacatttttctgaacactttatccagatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattattt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834919 ggtcatgaatgatgagtacaaacatttttctgaacactttatccagatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattattt 50835018  T
Q  601 tagcatttgattatagccataa 622  Q
    ||||||||||||||||||||||    
T  50835019 tagcatttgattatagccataa 50835040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 50841434 - 50840813
Alignment:
Q  1 cttcttctgatcttcaacacacaaaaacccttcttcttatgccctcacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841434 cttcttctgatcttcaacacacaaaaacccttcttcttatgccctcacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaattt 50841335  T
Q  101 cttcatttggagttttgaatgtcttttattgactttgcattagtgttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841334 cttcatttggagttttgaatgtcttttattgactttgcattagtgttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgta 50841235  T
Q  201 cctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841234 cctttcacatggattcttggcatcaattctccaagcccataaccatatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaat 50841135  T
Q  301 attctgtttcagagttataaatatattctggataatttgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841134 attctgtttcagagttataaatatattctggataatttgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcact 50841035  T
Q  401 atccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattannnnnnng 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  50841034 atccatctattttcttttaaaaagtttcatggtctcttggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattatttttttg 50840935  T
Q  501 ggtcatgaatgatgagtacaaacatttttctgaacactttatccagatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattattt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50840934 ggtcatgaatgatgagtacaaacatttttctgaacactttatccagatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattattt 50840835  T
Q  601 tagcatttgattatagccataa 622  Q
    ||||||||||||||||||||||    
T  50840834 tagcatttgattatagccataa 50840813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 338 - 622
Target Start/End: Original strand, 11729626 - 11729910
Alignment:
Q  338 tgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctct 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11729626 tgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctct 11729725  T
Q  438 tggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattannnnnnngggtcatgaatgatgagtacaaacatttttctgaacac 537  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||    
T  11729726 tggtttcttgaaattccaaggttgttctatctttctttcttattttgttacattatttttttaggtcatgaatgatgagtacaaacatttttctgaacac 11729825  T
Q  538 tttatccagatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattattttagcatttgattatagccataa 622  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11729826 tttatccagatttctttgtaatttatagtggttaatggttttcatggttgtttagtattattttagcatttgattatagccataa 11729910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 338 - 622
Target Start/End: Original strand, 23739938 - 23740222
Alignment:
Q  338 tgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctct 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23739938 tgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctct 23740037  T
Q  438 tggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattannnnnnngggtcatgaatgatgagtacaaacatttttctgaacac 537  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||    
T  23740038 tggtttcttgaaattccaaggttgttctatctttctttcttattttgttacattatttttttaggtcatgaatgatgagtacaaacatttttctgaacac 23740137  T
Q  538 tttatccagatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattattttagcatttgattatagccataa 622  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23740138 tttatccagatttctttgtaatttatagtggttaatggttttcatggttgtttagtattattttagcatttgattatagccataa 23740222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 43618697 - 43618669
Alignment:
Q  19 acacaaaaacccttcttcttatgccctca 47  Q
    |||||||||||||||||||||||||||||    
T  43618697 acacaaaaacccttcttcttatgccctca 43618669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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