View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_30 (Length: 250)
Name: NF9868_low_30
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48667788 - 48668029
Alignment:
| Q |
1 |
tcctccttcacattctttggtgatgataaaacaccaaaacaataaaattaaatattttgaagaatgagttaatgaatctgctgatactaacttgtttaga |
100 |
Q |
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| T |
48667788 |
tcctccttcacattctttggtgatgataaaacaccaaaacaataaaattaaatattttgaagaatgagttaatgaatctgctgatactaacttgtttaga |
48667887 |
T |
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| Q |
101 |
actgaaaattatttaattatccaataacacattcagtatcaaatgaatttgtgtgcaaatacaacagtcaacagaactataatattgtcataaagtttnn |
200 |
Q |
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| T |
48667888 |
actgaaaattatttaattatccaataacacatttagtatcaaatgaatttgtgtgcaaatacaacagtcaacagaactataatattgtcataaagtttta |
48667987 |
T |
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| Q |
201 |
nnnnncaatatatggtgcaataatttaatgagcctctctgct |
242 |
Q |
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| T |
48667988 |
aaaaacaatatatggtgcaataatttaatgagcctctctgct |
48668029 |
T |
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