View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_36 (Length: 230)

Name: NF9868_low_36
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_36
NF9868_low_36
[»] chr5 (26 HSPs)
chr5 (1-196)||(30248895-30249095)
chr5 (2-196)||(34443896-34444095)
chr5 (1-192)||(34846289-34846497)
chr5 (1-196)||(35468821-35469033)
chr5 (1-196)||(15675232-15675443)
chr5 (1-99)||(33006939-33007037)
chr5 (33-145)||(15503902-15504014)
chr5 (33-157)||(16667499-16667635)
chr5 (33-196)||(21068927-21069107)
chr5 (33-157)||(36234588-36234712)
chr5 (90-195)||(2476335-2476445)
chr5 (48-196)||(16567721-16567886)
chr5 (33-98)||(17192675-17192740)
chr5 (33-97)||(767316-767380)
chr5 (1-65)||(14832796-14832860)
chr5 (48-99)||(43228663-43228714)
chr5 (52-196)||(42989463-42989613)
chr5 (48-96)||(7162104-7162152)
chr5 (47-99)||(12267429-12267481)
chr5 (48-193)||(32953688-32953850)
chr5 (2-65)||(2476431-2476494)
chr5 (35-95)||(7159609-7159669)
chr5 (50-196)||(37779595-37779757)
chr5 (48-99)||(1672507-1672558)
chr5 (50-87)||(37607513-37607550)
chr5 (33-97)||(15436028-15436091)
[»] chr4 (27 HSPs)
chr4 (1-196)||(40969155-40969355)
chr4 (1-196)||(31364067-31364266)
chr4 (1-197)||(10715584-10715787)
chr4 (1-197)||(10929354-10929557)
chr4 (2-196)||(4552116-4552315)
chr4 (2-196)||(2017423-2017622)
chr4 (1-196)||(4728477-4728689)
chr4 (33-157)||(41972454-41972578)
chr4 (1-146)||(10058511-10058668)
chr4 (7-196)||(2576091-2576297)
chr4 (1-157)||(46645566-46645734)
chr4 (46-196)||(50383819-50383974)
chr4 (77-197)||(32005845-32005969)
chr4 (38-157)||(8901778-8901897)
chr4 (33-157)||(49745014-49745138)
chr4 (33-99)||(25237609-25237675)
chr4 (78-195)||(1585642-1585763)
chr4 (33-148)||(50099824-50099939)
chr4 (33-99)||(2521948-2522014)
chr4 (48-100)||(9694131-9694183)
chr4 (48-99)||(14044390-14044441)
chr4 (33-100)||(31929048-31929115)
chr4 (33-99)||(36947551-36947617)
chr4 (48-92)||(9003607-9003651)
chr4 (33-157)||(52373713-52373837)
chr4 (127-196)||(25237495-25237569)
chr4 (33-94)||(41955263-41955324)
[»] chr2 (18 HSPs)
chr2 (1-196)||(13203698-13203898)
chr2 (1-196)||(41114854-41115054)
chr2 (1-157)||(18299127-18299283)
chr2 (1-153)||(6799870-6800022)
chr2 (1-197)||(22572685-22572885)
chr2 (2-157)||(29257341-29257496)
chr2 (1-196)||(2475753-2475958)
chr2 (36-148)||(12000506-12000619)
chr2 (33-157)||(17148756-17148879)
chr2 (33-196)||(304141-304307)
chr2 (34-154)||(33909359-33909479)
chr2 (33-194)||(41010409-41010574)
chr2 (33-157)||(25562898-25563034)
chr2 (34-96)||(17249354-17249416)
chr2 (36-92)||(15651247-15651303)
chr2 (34-106)||(15429205-15429276)
chr2 (33-95)||(34756728-34756790)
chr2 (80-154)||(45444495-45444569)
[»] chr1 (26 HSPs)
chr1 (1-196)||(27583998-27584198)
chr1 (1-157)||(25011522-25011677)
chr1 (2-196)||(25007394-25007593)
chr1 (2-196)||(37153976-37154175)
chr1 (2-196)||(44305342-44305541)
chr1 (32-197)||(27460625-27460795)
chr1 (1-197)||(14727247-14727460)
chr1 (1-197)||(31844605-31844818)
chr1 (1-97)||(6331720-6331816)
chr1 (33-196)||(24645984-24646151)
chr1 (1-196)||(8239210-8239423)
chr1 (33-155)||(9527021-9527143)
chr1 (33-157)||(44238875-44239000)
chr1 (53-196)||(4773937-4774085)
chr1 (35-157)||(4642089-4642211)
chr1 (1-193)||(33468935-33469121)
chr1 (2-65)||(1428405-1428468)
chr1 (38-100)||(48940438-48940500)
chr1 (35-93)||(24745450-24745508)
chr1 (33-147)||(6802113-6802231)
chr1 (34-104)||(34459136-34459206)
chr1 (90-207)||(49898334-49898456)
chr1 (90-156)||(1428454-1428520)
chr1 (166-200)||(4163368-4163402)
chr1 (1-42)||(4642022-4642063)
chr1 (33-65)||(3216124-3216156)
[»] chr3 (26 HSPs)
chr3 (2-196)||(44047520-44047719)
chr3 (2-198)||(28311211-28311412)
chr3 (2-196)||(53651835-53652033)
chr3 (2-196)||(12909763-12909963)
chr3 (1-196)||(25391809-25392009)
chr3 (1-196)||(37516567-37516778)
chr3 (2-157)||(14461045-14461200)
chr3 (1-196)||(26371006-26371218)
chr3 (33-157)||(33179141-33179265)
chr3 (1-153)||(7500928-7501092)
chr3 (33-193)||(53068194-53068346)
chr3 (62-197)||(44625633-44625773)
chr3 (48-197)||(53987799-53987953)
chr3 (49-197)||(9600286-9600438)
chr3 (1-65)||(43700178-43700242)
chr3 (34-101)||(41218389-41218456)
chr3 (39-145)||(47511667-47511773)
chr3 (48-94)||(35077267-35077313)
chr3 (35-105)||(38239485-38239555)
chr3 (90-191)||(43700228-43700333)
chr3 (48-97)||(26278403-26278452)
chr3 (34-101)||(41358632-41358700)
chr3 (157-192)||(7500875-7500910)
chr3 (33-90)||(36869966-36870023)
chr3 (167-196)||(41218539-41218568)
chr3 (33-73)||(43447620-43447660)
[»] chr6 (13 HSPs)
chr6 (1-193)||(34248998-34249195)
chr6 (1-196)||(1781007-1781207)
chr6 (1-196)||(23663744-23663944)
chr6 (32-196)||(10397808-10397977)
chr6 (1-196)||(9695975-9696186)
chr6 (1-99)||(2941255-2941353)
chr6 (1-196)||(9046900-9047111)
chr6 (2-195)||(15528879-15529076)
chr6 (7-99)||(15122076-15122168)
chr6 (49-193)||(14938943-14939092)
chr6 (33-156)||(339311-339434)
chr6 (33-99)||(2836217-2836283)
chr6 (48-157)||(2960659-2960768)
[»] chr8 (11 HSPs)
chr8 (1-193)||(24964966-24965163)
chr8 (1-196)||(28927990-28928190)
chr8 (32-195)||(34282913-34283081)
chr8 (1-196)||(36406474-36406686)
chr8 (50-196)||(38214689-38214840)
chr8 (2-157)||(3384005-3384172)
chr8 (48-157)||(27321882-27321991)
chr8 (33-99)||(13243126-13243192)
chr8 (33-99)||(39431679-39431745)
chr8 (33-196)||(21138075-21138243)
chr8 (39-87)||(31500854-31500902)
[»] scaffold0075 (2 HSPs)
scaffold0075 (2-196)||(11456-11653)
scaffold0075 (2-154)||(6888-7040)
[»] scaffold0618 (1 HSPs)
scaffold0618 (2-157)||(1670-1825)
[»] chr7 (21 HSPs)
chr7 (2-196)||(35300414-35300625)
chr7 (1-96)||(23704454-23704549)
chr7 (1-196)||(26722923-26723134)
chr7 (33-157)||(815002-815126)
chr7 (32-196)||(41759624-41759804)
chr7 (35-117)||(21688129-21688211)
chr7 (35-157)||(21932798-21932919)
chr7 (33-148)||(42439591-42439706)
chr7 (48-196)||(5991440-5991602)
chr7 (33-99)||(28694057-28694123)
chr7 (30-111)||(38991174-38991255)
chr7 (33-108)||(38129010-38129085)
chr7 (48-157)||(30852317-30852426)
chr7 (33-95)||(3012346-3012408)
chr7 (33-97)||(4843338-4843402)
chr7 (48-99)||(7873240-7873291)
chr7 (36-99)||(19377427-19377490)
chr7 (51-193)||(22206709-22206868)
chr7 (51-193)||(22227871-22228030)
chr7 (48-87)||(25688210-25688249)
chr7 (91-148)||(3012281-3012338)
[»] scaffold0638 (1 HSPs)
scaffold0638 (48-99)||(4143-4194)
[»] scaffold0021 (1 HSPs)
scaffold0021 (33-99)||(109316-109382)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 30249095 - 30248895
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30249095 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 30248996  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
     |||| |||||||||||  |||| ||||| |||||||||||||||||| |||| ||     |||||||| ||||||||||||||||||||||||||||||    
T  30248995 aaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcccct 30248896  T
Q  196 g 196  Q
    |    
T  30248895 g 30248895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 34444095 - 34443896
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  |||| ||||||||||| ||||||||||||| |    
T  34444095 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcatttcttgcggaatttagacaaaaatccgcagg 34443996  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| ||| |||||||  ||||||| || |||||||||||||||||| |||||||     |||||||| |||||||||||||||||||||||||||||||    
T  34443995 aaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 34443896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 34846497 - 34846289
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaa------- 93  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||           
T  34846497 tttcacatttcctacggatatatctttcatgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatccggag 34846398  T
Q  94 -----tccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
         |||||| || || |||||||||||  |||||||| |||||||||||||||||||| |||| ||     |||||||| ||||||||||||||||||    
T  34846397 gtaaatccgcaggataagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggt 34846298  T
Q  184 ggctccgcc 192  Q
    |||||||||    
T  34846297 ggctccgcc 34846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 35469033 - 35468821
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca- 99  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35469033 tttcacattttctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 35468934  T
Q  100 ----------agaaaaa-ct-aaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctgggggg 182  Q
              ||||||| || |||||||||   ||||||||| |||||||||||||||||| |||| ||     |||||||| ||||||||||| |||||    
T  35468933 aaaaatccgcagaaaaagctaaaaaattctagcaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagct-ggggg 35468835  T
Q  183 tggctccgcccctg 196  Q
    ||||||||||||||    
T  35468834 tggctccgcccctg 35468821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 15675443 - 15675232
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca- 99  Q
    ||||| ||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  15675443 tttcacatttccttcggatatatctttcctgcggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcag 15675344  T
Q  100 ----------agaaaaa-ctaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
              |||||||  ||||||||||  ||||||||||  |||| ||||||||||||||||| ||     |||||||| ||||||||||| ||||||    
T  15675343 gtaaatccgcagaaaaagttaaaaattctagtaatggttgggtttgcaacaaagaaagttagagccgagcctgggcactagcccaggctagct-gggggt 15675245  T
Q  184 ggctccgcccctg 196  Q
    |||||||||||||    
T  15675244 ggctccgcccctg 15675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 33007037 - 33006939
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33007037 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatccgca 33006939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 15504014 - 15503902
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||  |||||||| | ||    
T  15504014 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttaggct 15503915  T
Q  133 tgctacaaagaaa 145  Q
    |||||||||||||    
T  15503914 tgctacaaagaaa 15503902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 16667499 - 16667635
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcat 120  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||            ||||||||| ||||| |||||| ||||  |    
T  16667499 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaagttctagt 16667598  T
Q  121 aatggttggacttgctacaaagaaagttagagctgag 157  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  16667599 aatggctggacttgctacaaagaaagttggagctgag 16667635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 21069107 - 21068927
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcat 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||            ||||||||| ||||  |||||||||||  |    
T  21069107 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaatgcgcaggtaaatccgcaggaaaggctaaaaattctagt 21069008  T
Q  121 aatggttggacttgctacaaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    ||||||||| ||| |||||||||||||||||| ||||   |  |||||  ||||||||||||||| |||||||||||||||    
T  21069007 aatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagctggggtgtggctccgcccctg 21068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 36234588 - 36234712
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    ||||| |||| | |||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||  ||||| |||| ||||||| ||| ||    
T  36234588 ggaacttaaacccttggtaaaatctgcaggaaatgcgtttcctgctgaatttacataaaaatccgcatgaaaagttaaaagttctaataatggctgggct 36234687  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    ||||||||||||| || ||||||||    
T  36234688 tgctacaaagaaaattggagctgag 36234712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 2476445 - 2476335
Alignment:
Q  90 aaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtg 184  Q
    |||||||||| ||||| |||||||||||  ||||||| |||||||||||||||||| || |||||||     |||||||| ||||||||||||||||| |    
T  2476445 aaaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggcactagcccaggctagctggggggag 2476346  T
Q  185 gctccgcccct 195  Q
    |||||||||||    
T  2476345 gctccgcccct 2476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 16567886 - 16567721
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcataatggttggacttgc 135  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||            ||||||||||||||| |||||| ||||  |||||| |||||||||    
T  16567886 ggcaaaatctgtaggaaatgtgtttcctgcgaaatttacataacaattcgcaggtaaatccgcaagaaaagctaaaagttctagtaatggctggacttgc 16567787  T
Q  136 tacaaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    |||||||||| || ||||||||   |  |||||  |||||||||||||||||||||||||||||||    
T  16567786 tacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccctg 16567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 17192675 - 17192740
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc 98  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  17192675 ggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaattgacacaaaaatccgc 17192740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 767380 - 767316
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 97  Q
    |||| ||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  767380 ggaatctaaatccttggcaaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatccg 767316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14832796 - 14832860
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaa 65  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||    
T  14832796 tttcacatttcctacggatatatctttcctgcggaatctaaatccttggcaaaatctacaggaaa 14832860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 43228663 - 43228714
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  43228663 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaacatccgca 43228714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 42989613 - 42989463
Alignment:
Q  52 aaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttaga 151  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||  |||| | | || ||||  |||||| ||| |||||  ||||||||||   |    
T  42989613 aaatccgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcagaaaaagcgagaagttctagtaatggctgggcttgcctcaaagaaagtagaa 42989514  T
Q  152 gctga---ggcactagt---ccaggctagctggggggtggctccgcccctg 196  Q
    |||||    |  |||||   |||||||||||||||||||||||||||||||    
T  42989513 gctgatcctgggctagtgccccaggctagctggggggtggctccgcccctg 42989463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 7162104 - 7162152
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 96  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  7162104 ggcaaaatctgcaggaaatgtgtttcctgtggaatttacataaaaatcc 7162152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 12267429 - 12267481
Alignment:
Q  47 tggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  12267429 tggcaaaatctacaggaaatgtgtttcttgcggaatttacataaaaatccgca 12267481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 32953688 - 32953850
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcataatggttggacttgc 135  Q
    |||||||||||||||||||||||||||| ||||||||||| ||            ||||||| | ||||| |||||| ||||  |||||| ||| |||||    
T  32953688 ggcaaaatctgcaggaaatgtgtttcctacggaatttacataaaaatttgcaggtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgc 32953787  T
Q  136 tacaaagaaagttagagctgaggc---actagt--ccaggctagctggggggtggctccgccc 193  Q
    |||||||||| || |||||||| |    |||||  ||||||||||||||||||||||||||||    
T  32953788 tacaaagaaaattggagctgagcctcggctagtgcccaggctagctggggggtggctccgccc 32953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 2476494 - 2476431
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaa 65  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||  |||||| ||||||||    
T  2476494 ttcacatttcctacggatatatctttcctgcggaacctaaatccttgataaaatccgcaggaaa 2476431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 7159609 - 7159669
Alignment:
Q  35 aacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 95  Q
    |||||||||  ||||||||||| |||||||| |||||||||||||||| ||||| ||||||    
T  7159609 aacctaaattcttggcaaaatccgcaggaaacgtgtttcctgcggaatgtacaccaaaatc 7159669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 37779757 - 37779595
Alignment:
Q  50 caaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcataatggttggacttgcta 137  Q
    |||||||||||||||||||||||| | ||||||||||| ||            |||||||||  ||||||||||| ||||  |||||| || ||||||||    
T  37779757 caaaatctgcaggaaatgtgtttcatacggaatttacataaatattcgcaggtaaatccgcagaaaaaactaaaagttctagtaatggctgaacttgcta 37779658  T
Q  138 caaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    |||||||| || ||| ||||   | ||||||  ||||||||||| |||||||||||||||||||    
T  37779657 caaagaaaattggagttgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 37779595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 1672507 - 1672558
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||||| ||||    
T  1672507 ggcaaaatctgcagaaaatatgtttcctgcggaatgtacataaaaattcgca 1672558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 37607550 - 37607513
Alignment:
Q  50 caaaatctgcaggaaatgtgtttcctgcggaatttaca 87  Q
    |||||||||||||||||||||||| | |||||||||||    
T  37607550 caaaatctgcaggaaatgtgtttcatacggaatttaca 37607513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 15436091 - 15436028
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 97  Q
    |||| ||||||| | ||||||||| ||||||||| ||||||||||||||||| ||  ||||||||    
T  15436091 ggaatctaaatcctaggcaaaatccgcaggaaat-tgtttcctgcggaattttcattaaaatccg 15436028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40969355 - 40969155
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||     
T  40969355 tttcacatttcctacggatatatctttcctgcggaacctaaatcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaatccgcag 40969256  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag-----gcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||     ||||||| |||||||||||||||| | |||||||||||    
T  40969255 gaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaagctgagcctgagcactagcccaggctagctgggggatagctccgcccct 40969156  T
Q  196 g 196  Q
    |    
T  40969155 g 40969155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 31364266 - 31364067
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31364266 tttcacatttcctacggatatatcttttctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 31364167  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    |||||||||||| ||||  ||||||||||| ||||||||||||||||| |||| ||     |||||||| ||||||||||| ||||||||||||||||||    
T  31364166 gaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttggagccgagcctgggcactagcccaggctagct-gggggtggctccgcccct 31364068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 10715787 - 10715584
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcagga-aatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10715787 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgca 10715688  T
Q  100 agaaaaactaaaaattctcataatggttggacttgc-tacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgccc 193  Q
     ||||| |||||||||||  |||||||||| ||||| ||||||||||||| |||| ||     |||||||| ||||||||||||||||||||||||||||    
T  10715687 ggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgccc 10715588  T
Q  194 ctgt 197  Q
    ||||    
T  10715587 ctgt 10715584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 10929557 - 10929354
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcagga-aatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10929557 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgca 10929458  T
Q  100 agaaaaactaaaaattctcataatggttggacttgc-tacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgccc 193  Q
     ||||| |||||||||||  |||||||||| ||||| ||||||||||||| |||| ||     |||||||| ||||||||||||||||||||||||||||    
T  10929457 ggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgccc 10929358  T
Q  194 ctgt 197  Q
    ||||    
T  10929357 ctgt 10929354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 4552315 - 4552116
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||| ||||||||| |    
T  4552315 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacacaaatccgcagg 4552216  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  ||||||| || |||||||||||||||||| |||||||     |||||||| ||||||||||||||||| |||||||||||||    
T  4552215 aaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggggggctccgcccctg 4552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 2017423 - 2017622
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||| ||||||   |||||||||||||||||||||||||||||| |    
T  2017423 ttcacatttcctacggatatatctttcctgcggaacctaaatacttggcaaaatctgcgggaaatacatttcctgcggaatttacacaaaaatccgcagg 2017522  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  ||||||| |  |||||||||||||||||| ||||| |     |||||||| |||||||||||||||||||||||||||||||    
T  2017523 aaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggcactagcccaggctagctggggggtggctccgcccctg 2017622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4728689 - 4728477
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc----- 95  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||         
T  4728689 tttcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatccgcag 4728590  T
Q  96 -------cgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
           |||| ||||| |||||||||||  |||||||| | |||||||||||||||||| |||| ||     |||||||| ||| ||||||||||||||    
T  4728589 gtaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagtctgggcactagcccaagctagctggggggt 4728490  T
Q  184 ggctccgcccctg 196  Q
    |||||||||||||    
T  4728489 ggctccgcccctg 4728477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 41972454 - 41972578
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||  |||||||| | ||    
T  41972454 ggaaccttaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaagttctagtaatggttcggct 41972553  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    |||||||||||||||| ||||||||    
T  41972554 tgctacaaagaaagttggagctgag 41972578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 10058668 - 10058511
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||              
T  10058668 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggtaaaatctgctggaaatgtgtttcctgcggaatttacacaaaattccccag 10058569  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaag 146  Q
      ||||||||  ||||| |||||||||||| |||||||||| ||||||||||||||||    
T  10058568 gtaaatccgcgggaaaagctaaaaattctcgtaatggttgggcttgctacaaagaaag 10058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 2576297 - 2576091
Alignment:
Q  7 atttcctacggatatatctttcatgcggaacctaaatctttggcaaaa-tctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag---- 101  Q
    ||||||||||||||||| |||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||        
T  2576297 atttcctacggatatatatttcctgcggaacctacatccttggcaaaaatctgcaggaaatgtgtttcctgcggaatttatacaaaaattcgcaagtaaa 2576198  T
Q  102 --------aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctc 188  Q
            |||| |||||||||||  |||||||||| |||||||||||||||||| |||||||     |||||||| |||| |||||| |||| ||||||    
T  2576197 ttcgcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccagactagct-ggggttggctc 2576099  T
Q  189 cgcccctg 196  Q
    ||||||||    
T  2576098 cgcccctg 2576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 46645734 - 46645566
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca- 99  Q
    |||||||||| ||||||||||||||||| |||||||||||||   ||||||||||||||| |||||||||||||||| |||||||||||||||||||||     
T  46645734 tttcatattttctacggatatatctttcctgcggaacctaaactcttggcaaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatccgcag 46645635  T
Q  100 ----------agaaaaa-ctaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
              ||||||| |||||||||||  |||||||||| |||||||||||| ||||| ||||||||    
T  46645634 gtaaatccgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgag 46645566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 50383974 - 50383819
Alignment:
Q  46 ttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaa 145  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||| ||||||| ||||| |||||| ||||  |||||| ||| |||||||||||||||    
T  50383974 ttggcaaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaa 50383875  T
Q  146 gttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    ||| ||||||||   |  | |||  |||||||||||||||||||||||||||||||    
T  50383874 gttggagctgagcctgggccagtgcccaggctagctggggggtggctccgcccctg 50383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 32005969 - 32005845
Alignment:
Q  77 cggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggc 171  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||| |||||||     |||||||| ||||||    
T  32005969 cggaatttacacaaaaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggc 32005870  T
Q  172 tagctggggggtggctccgcccctgt 197  Q
    ||||| ||||||||||||||||||||    
T  32005869 tagct-gggggtggctccgcccctgt 32005845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 8901897 - 8901778
Alignment:
Q  38 ctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgcta 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||  ||||| |||| | ||||| ||| ||| |||    
T  8901897 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgcaggaaaagttaaaagttctaaaaatggctgggctttcta 8901798  T
Q  138 caaagaaagttagagctgag 157  Q
    ||||||||||| ||||||||    
T  8901797 caaagaaagttggagctgag 8901778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 49745138 - 49745014
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||  || |||||  ||||| ||||  |||||| | ||||    
T  49745138 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttacacaaaaatctacaggaaaaggtaaaacttctagtaatggctagact 49745039  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    || || |||||||||| ||||||||    
T  49745038 tgttataaagaaagttggagctgag 49745014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 25237675 - 25237609
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25237675 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaattccgca 25237609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 1585763 - 1585642
Alignment:
Q  78 ggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggct 172  Q
    |||||||||||||||||| ||| ||||| |||||||||||  ||||||| || ||||||||||||||||||  ||||||     |||||||| |||||||    
T  1585763 ggaatttacacaaaaatctgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggct 1585664  T
Q  173 agctggggggtggctccgcccct 195  Q
    |||| ||||||||||||||||||    
T  1585663 agct-gggggtggctccgcccct 1585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 50099939 - 50099824
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| || ||||||| ||||| |||||  |||||| |||||||||||||||||||||||  |||| ||||||  |||  ||||||||| |||    
T  50099939 ggaacctaaatccttagcaaaatttgcagaaaatgaatttcctacggaatttacacaaaaatccgcagaaaaagctaaaagctctagtaatggttgaact 50099840  T
Q  133 tgctacaaagaaagtt 148  Q
    | ||||||||||||||    
T  50099839 tactacaaagaaagtt 50099824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 2521948 - 2522014
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||| |||  ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2521948 ggaacctaaatccttgataaaatctacaggaaatgtgtttcctgcggactttacacaaaaatccgca 2522014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 9694183 - 9694131
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  9694183 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaattccgcaa 9694131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 14044441 - 14044390
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  14044441 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaattcgca 14044390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 31929048 - 31929115
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    |||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||  |||||||||||    
T  31929048 ggaacctaaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttacaataaaatccgcaa 31929115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 36947617 - 36947551
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  36947617 ggaacctaaattcttggcaaaatccgcaggaaatatgtttcctgcagaatttatacaaaaatccgca 36947551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 9003651 - 9003607
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 92  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  9003651 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 9003607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 52373837 - 52373713
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    ||||||||||||  || ||||||||||| |||||  |||| |||||||||||||||||||||| |||  ||||  ||||| ||||  |||||  ||  ||    
T  52373837 ggaacctaaatccctgacaaaatctgcaagaaatacgttttctgcggaatttacacaaaaatctgcagaaaaagttaaaagttctagtaatgactgagct 52373738  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    | ||| |||||||||| ||||||||    
T  52373737 tactataaagaaagttggagctgag 52373713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 25237569 - 25237495
Alignment:
Q  127 tggacttgctacaaagaaagttagagctgaggca---ctagtcc--aggctagctggggggtggctccgcccctg 196  Q
    ||||||| |||||||||||||| |||||||| |    ||||| |  |||||||||||||||||||||||||||||    
T  25237569 tggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagctggggggtggctccgcccctg 25237495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 41955324 - 41955263
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaat 94  Q
    |||||||||||| ||||| ||||| | ||||||  |||||||||| |||||||||| |||||    
T  41955324 ggaacctaaatccttggcgaaatccgtaggaaacatgtttcctgctgaatttacaccaaaat 41955263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13203898 - 13203698
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  13203898 tttcacatttcctacggatatctctttcctgcggaacctaaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatccgcag 13203799  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||| |||||||     |||||||| |||||||||||||||||||||||| |||||    
T  13203798 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccacccct 13203699  T
Q  196 g 196  Q
    |    
T  13203698 g 13203698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 41114854 - 41115054
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  41114854 tttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatccgcag 41114953  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    |||||||||||||||||  |||||||||  |||||||||||||||||| |||| ||     |||||||| |||||||||||||||| |||||||||||||    
T  41114954 gaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggatggctccgcccct 41115053  T
Q  196 g 196  Q
    |    
T  41115054 g 41115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 18299127 - 18299283
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18299127 tttcacatttcctacagatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 18299226  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
    |||||  ||||||||||  |||||||||| |||||||||||||||||| ||| ||||    
T  18299227 gaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttggaggtgag 18299283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 6799870 - 6800022
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6799870 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 6799969  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagc 153  Q
    |||||  ||||||||||  |||||||||  |||||||||||||||||| ||||    
T  6799970 gaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttggagc 6800022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 22572685 - 22572885
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||     
T  22572685 tttcacatttcctatgaatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaaaaattcgcag 22572784  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| ||||| |||||  |||||||| | |||||||||||||||||| |||||||     | |||||| ||||||||||  ||||||||||||||| ||    
T  22572785 gaaaagctaaatattctagtaatggttaggcttgctacaaagaaagttggagctgagcctggacactagcccaggctagc-cgggggtggctccgccgct 22572883  T
Q  196 gt 197  Q
    ||    
T  22572884 gt 22572885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 29257496 - 29257341
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |    
T  29257496 ttcacatttcctacggatatatctttcctgcggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaagg 29257397  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
    ||||  |||||||| | |||||| |||| ||| |||||||||||||| ||||||||    
T  29257396 aaaaggtaaaaattttaataatgattgggctttctacaaagaaagttggagctgag 29257341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2475958 - 2475753
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctg-----cggaatttacacaaaaatc 95  Q
    ||||| ||||||| || ||||||||||| ||||||||||| ||| ||||||||||||||| |||||| ||||| ||     |||||||||||||||||||    
T  2475958 tttcacatttcctgcgaatatatctttcctgcggaacctatatcattggcaaaatctgcaagaaatgagtttcatgttgtgcggaatttacacaaaaatc 2475859  T
Q  96 cgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccg 190  Q
    ||||||| || |||||| ||||  |||||| ||| ||| |||||||||||||| ||||||||   | ||||||  |||  ||||||||||||||||||||    
T  2475858 cgcaagacaagctaaaagttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgcccaaactagctggggggtggctccg 2475759  T
Q  191 cccctg 196  Q
     |||||    
T  2475758 tccctg 2475753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 12000619 - 12000506
Alignment:
Q  36 acctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa-atccgcaagaaaaactaaaaattctcataatggttggacttg 134  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||  |||||| ||||||||    
T  12000619 acctatatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaacatccgcaggaaaagctaaaacttctactaatggctggacttg 12000520  T
Q  135 ctacaaagaaagtt 148  Q
     |||||||||||||    
T  12000519 ttacaaagaaagtt 12000506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 17148879 - 17148756
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| || |  |||||| ||  ||    
T  17148879 ggaacctaaatccttg-caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaacctaaaagttatagtaatggctgagct 17148781  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    |||||||||||||||| ||||||||    
T  17148780 tgctacaaagaaagttggagctgag 17148756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 304141 - 304307
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||  || |||||| ||||| |||||| ||||  |||||| ||  ||    
T  304141 ggaacctaaatccttggcaaaatctgcaagaaatgtgtttcctgcgaaatttacac--aactccgcaggaaaagctaaaagttctagtaatggctgagct 304238  T
Q  133 tgctacaaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    |||||||||||||||| ||||||||   |  |||||  ||| ||||||||||||||||| |||||||||    
T  304239 tgctacaaagaaagttggagctgagcttgggctagtgcccaagctagctggggggtggcaccgcccctg 304307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 33909359 - 33909479
Alignment:
Q  34 gaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggactt 133  Q
    |||||||||||||||| |||||||||||||||||| | |||||| |||||| ||||||||| |||| |||||||||||||||||  |||||  ||  |||    
T  33909359 gaacctaaatctttggaaaaatctgcaggaaatgtttctcctgcagaattttcacaaaaattcgcaggaaaaactaaaaattctagtaatgactgagctt 33909458  T
Q  134 gctacaaagaaagttagagct 154  Q
    ||||||||||||||| |||||    
T  33909459 gctacaaagaaagttggagct 33909479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 41010574 - 41010409
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||| ||||  |||| | || |||    
T  41010574 ggaacctaaatccttagtaaaatctgcaggaaatgtgtttcctgcagaatttatacaaaaatccgcagaaaaaactaaaagttctagtaatagctgaact 41010475  T
Q  133 tgctacaaagaaagttagagctgaggc---actagt--ccaggctagctggggggtggctccgcccc 194  Q
    |  |||||| |||||| |||||||| |   ||||||  ||||||||||| |||| ||||||||||||    
T  41010474 tagtacaaaaaaagttggagctgagtctagactagtgcccaggctagct-ggggttggctccgcccc 41010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 25563034 - 25562898
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcat 120  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||            ||||||||| ||||| |||||| ||||  |    
T  25563034 ggaacctaaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttacaaaacaatccgcagataaatccgcaggaaaagctaaaagttctagt 25562935  T
Q  121 aatggttggacttgctacaaagaaagttagagctgag 157  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  25562934 aatggttgggcttgctacaaagaaagttggagctgag 25562898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 17249416 - 17249354
Alignment:
Q  34 gaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 96  Q
    ||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  17249416 gaacctaaatccttggcaaaatctacaagaaatgtgtttcctgtggaatttacacaaaaatcc 17249354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 15651303 - 15651247
Alignment:
Q  36 acctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 92  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  15651303 acctaaatccttggcaaaatacgcaggaaatgtgtttcctgcggaatttacacaaaa 15651247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 15429276 - 15429205
Alignment:
Q  34 gaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaa 106  Q
    ||||||||||| ||| |||||||  |||||||  ||||||||||||||||||||| |||||||| ||||||||    
T  15429276 gaacctaaatccttgacaaaatccacaggaaacatgtttcctgcggaatttacaccaaaatccg-aagaaaaa 15429205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 34756790 - 34756728
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 95  Q
    |||||||||||| |||||||||||  ||||||| ||| ||||| |||||||||||| ||||||    
T  34756790 ggaacctaaatccttggcaaaatccacaggaaacgtgattcctacggaatttacaccaaaatc 34756728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 45444495 - 45444569
Alignment:
Q  80 aatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagct 154  Q
    |||||||||||||||||||| ||||| ||||||||| | |||||   ||  ||| |||||||||||||| |||||    
T  45444495 aatttacacaaaaatccgcaggaaaagctaaaaattgtgataataactgagcttactacaaagaaagttggagct 45444569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27583998 - 27584198
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27583998 tttcacatttcctacggatatatctttcctggggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 27584097  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| |||||||||||  |||||||| | |||||||||||||||||| |||| ||     ||| |||| ||||||||||||||||||||||||||||||    
T  27584098 gaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctgggcgctagcccaggctagctggggggtggctccgcccct 27584197  T
Q  196 g 196  Q
    |    
T  27584198 g 27584198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 25011522 - 25011677
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  25011522 tttcacatttcctacggatatatctttc-tgcggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatccgcag 25011620  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||| ||||||||    
T  25011621 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgag 25011677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 25007593 - 25007394
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||   |||| ||||||||||||||||||||||||| |    
T  25007593 ttcacatttcctacggatatatctttcctgcagaacctaaatccttggcaaaatctgcaggaaatacatttcttgcggaatttacacaaaaatccgcagg 25007494  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  ||||||| || |||||||||||||||||| |||||||     |||| ||| |||||||||||||||||||||||||||||||    
T  25007493 aaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcattagcccaggctagctggggggtggctccgcccctg 25007394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 37153976 - 37154175
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||| |    
T  37153976 ttcacatttcctacggatatatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 37154075  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  ||||||| |  ||| |||||||||||||| |||||||     |||||||| |||||||||||||||||||||||||||||||    
T  37154076 aaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 37154175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 44305541 - 44305342
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||| |    
T  44305541 ttcacatttcctacggatatatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 44305442  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  |||| || || ||| |||||||||||||| |||||||     |||||||| |||||||||||||||||||||||||||||||    
T  44305441 aaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 44305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 27460795 - 27460625
Alignment:
Q  32 cggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggac 131  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||||| |    
T  27460795 cggaacctaaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatccgcaagaaaagctaaaaattctagtaatggttgggc 27460696  T
Q  132 ttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctgt 197  Q
    ||||||||||||||||| |||||||     |||||||| ||| ||||||| ||||||||||||||||||||    
T  27460695 ttgctacaaagaaagttggagctgagcctgggcactagcccatgctagctagggggtggctccgcccctgt 27460625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14727460 - 14727247
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||              
T  14727460 tttcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcag 14727361  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
      ||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||| |||||||     |||||||| ||||||||||| ||||||    
T  14727360 gtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggcactagcccaggctagcttgggggt 14727261  T
Q  184 ggctccgcccctgt 197  Q
    ||||||||||||||    
T  14727260 ggctccgcccctgt 14727247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 31844605 - 31844818
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||              
T  31844605 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatctgcag 31844704  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
      ||||||| | ||||| |||||| ||||  ||||||||||  |||||| |||||||||| ||| |||     ||||||||  |||||||||||||||||    
T  31844705 gtaaatccgtaggaaaagctaaaatttctagtaatggttgggtttgctagaaagaaagttggagttgagcctgggcactagatcaggctagctggggggt 31844804  T
Q  184 ggctccgcccctgt 197  Q
    ||||||||||||||    
T  31844805 ggctccgcccctgt 31844818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6331816 - 6331720
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 97  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6331816 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaaaatccg 6331720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 24646151 - 24645984
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||| |||||| ||||  |||||||| || |    
T  24646151 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtacacaaaaatccacaggaaaagctaaaagttctagtaatggtt-gagt 24646053  T
Q  133 tgctacaaagaaagttagagctgag---gcacta--gtccaggctagctggggggtggctccgcccctg 196  Q
    |||||||||||||||| ||| ||||   |  |||  ||||| |||||||||||||||||||||||||||    
T  24646052 tgctacaaagaaagttggagttgagcctgagctagtgtccatgctagctggggggtggctccgcccctg 24645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8239423 - 8239210
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaa--atgtgtttcctgcggaatttacacaaaaatcc-- 96  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||  || | |||||||||||||||||||||||||||      
T  8239423 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatatatatttcctgcggaatttacacaaaaatccgc 8239324  T
Q  97 ----------gcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggg 181  Q
              ||| ||||| |||||||||||  ||||||| ||  || |||||||||||||| |||||||     |||||||| ||||||||||| ||||    
T  8239323 aggtaaatctgcaggaaaagctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggcactagcccaggctagct-gggg 8239225  T
Q  182 gtggctccgcccctg 196  Q
    |||||||||||||||    
T  8239224 gtggctccgcccctg 8239210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 9527143 - 9527021
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| |||||||||||||||||| |||||||||||| | ||||||||| |||||||||| ||||| |||||| ||||  |||||| ||| ||    
T  9527143 ggaacctaaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttacaccaaaatccgcaggaaaagctaaaagttctagtaatggctgggct 9527044  T
Q  133 tgctacaaagaaagttagagctg 155  Q
    |||||||||||||||| ||||||    
T  9527043 tgctacaaagaaagttggagctg 9527021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 44238875 - 44239000
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttac-acaaaaatccgcaagaaaaactaaaaattctcataatggttggac 131  Q
    |||||||||||| |||||||||||| || |||||||||||||||| |||||||| | ||||||||||||||||| |||||| ||||  |||||| ||| |    
T  44238875 ggaacctaaatccttggcaaaatctacaagaaatgtgtttcctgcagaatttacaaaaaaaatccgcaagaaaagctaaaatttctagtaatggctgggc 44238974  T
Q  132 ttgctacaaagaaagttagagctgag 157  Q
    || |||||||||||||| ||||||||    
T  44238975 tttctacaaagaaagttggagctgag 44239000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 4774085 - 4773937
Alignment:
Q  53 aatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagag 152  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||| ||||  |||||| ||| ||||||||||| ||| || |||    
T  4774085 aatctgcaggaaatgtgtttcctgcggaatttacataaatatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggag 4773986  T
Q  153 ctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
     ||||   |  |||||  |||||||||||||||||||||||||||||||    
T  4773985 ttgagtctgggctagtgcccaggctagctggggggtggctccgcccctg 4773937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 4642089 - 4642211
Alignment:
Q  35 aacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttg 134  Q
    |||||||||| ||| ||||||||||| ||||||| ||||||| | |||||||| ||||||||||| ||||| |||||| ||||  |||||| || |||||    
T  4642089 aacctaaatccttgacaaaatctgcaagaaatgtatttcctgtgaaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggctgaacttg 4642188  T
Q  135 ctacaaagaaagttagagctgag 157  Q
    |||||||||||||  ||||||||    
T  4642189 ctacaaagaaagtcggagctgag 4642211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 33468935 - 33469121
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||| |||           |||||||||     
T  33468935 tttcacatttcctacagatatatctttcctgcggaacctaaatccttgacaaaatttgcaggaaatgtgtttcctacgg---------gtaaatccgcag 33469025  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctg-----aggcactagtccaggctagctggggggtggctccgccc 193  Q
    ||||| |||||| ||||  ||||||||| | |||||| |||||||||| ||||||     ||||||||| |||||||||||  |||||||||||||||    
T  33469026 gaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgagcctaggcactagcccaggctagct--ggggtggctccgccc 33469121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 1428405 - 1428468
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaa 65  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  1428405 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 1428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 48940438 - 48940500
Alignment:
Q  38 ctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48940438 ctaaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatccgcaa 48940500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 24745508 - 24745450
Alignment:
Q  35 aacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaa 93  Q
    |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  24745508 aacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaa 24745450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 6802113 - 6802231
Alignment:
Q  33 ggaacctaaatctttggcaaaatc----tgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttg 128  Q
    |||||||||||| |||||||||||     ||||||||||||||||||| |||||||||| ||||||||||| ||||| | | || ||||  |||||| ||    
T  6802113 ggaacctaaatccttggcaaaatccgcaggcaggaaatgtgtttcctgtggaatttacagaaaaatccgcaggaaaagcgagaagttctagtaatggctg 6802212  T
Q  129 gacttgctacaaagaaagt 147  Q
      |||||||||||||||||    
T  6802213 agcttgctacaaagaaagt 6802231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 34459206 - 34459136
Alignment:
Q  34 gaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaa 104  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||    
T  34459206 gaacttaaatccttggcaaaatctgcaggaaatgtgtttcctacggaaattccacaacaatccgcatgaaa 34459136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 49898456 - 49898334
Alignment:
Q  90 aaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgaggca---ctagt--ccaggctagctggggggtg 184  Q
    |||||| ||| ||||| |||||| ||||  |||||| || ||||| ||||||||||||| |||||||| |    |||||  |||||||||||||||||||    
T  49898456 aaaatctgcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtg 49898357  T
Q  185 gctccgcccctgtgtacaaacac 207  Q
    |||||||||||| ||| ||||||    
T  49898356 gctccgcccctgcgtataaacac 49898334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 1428454 - 1428520
Alignment:
Q  90 aaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga 156  Q
    |||||| ||| |||||||||||||||||  ||||||| || |||||||||||||||||| |||||||    
T  1428454 aaaatctgcaggaaaaactaaaaattctagtaatggtagggcttgctacaaagaaagttggagctga 1428520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 4163402 - 4163368
Alignment:
Q  166 ccaggctagctggggggtggctccgcccctgtgta 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  4163402 ccaggctagctggggggtggctccgtccctgtgta 4163368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4642022 - 4642063
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaa 42  Q
    ||||||||||||| |||||||||||||| |||||| ||||||    
T  4642022 tttcatatttcctgcggatatatctttcctgcggatcctaaa 4642063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 3216124 - 3216156
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaa 65  Q
    |||||||||||||||||||||||| ||||||||    
T  3216124 ggaacctaaatctttggcaaaatccgcaggaaa 3216156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 44047719 - 44047520
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||| |    
T  44047719 ttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 44047620  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  ||||||| || |||||||||||||||||| |||||||     || ||||| |||||||||||||||||||||||||||||||    
T  44047619 aaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggtactagcccaggctagctggggggtggctccgcccctg 44047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 28311412 - 28311211
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| ||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||||||   |||||||||||||||||||||||||||||| |    
T  28311412 ttcacatttcctacggatatatctttccagcggaacctaaatccttggcaaaatctacaggaaatacatttcctgcggaatttacacaaaaatccgcagg 28311313  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    ||||||||||||||||  ||||||| || |||| ||||||||||||| |||||||     ||||||| ||||||||||||||||||||||||||||||||    
T  28311312 aaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttggagctgagcctgggcactattccaggctagctggggggtggctccgcccctg 28311213  T
Q  197 tg 198  Q
    ||    
T  28311212 tg 28311211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 53652033 - 53651835
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |    
T  53652033 ttcacatttcctacggatatatctttcctgcagaacctaaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatccgcagg 53651934  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    |||| |||||||||||  ||||||| || |||||||||||||||||| |||||||     |||||||| ||||||||||| |||||||||||||||||||    
T  53651933 aaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagct-gggggtggctccgcccctg 53651835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 12909963 - 12909763
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtg--------tttcctgcggaatttacacaaaaa 93  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |        ||||||||||||||||||||||||    
T  12909963 ttcacatttcctacggatatatctttcctgcggaacctaaatctttggcaaaatctgcaggaaatcagaaaatacatttcctgcggaatttacacaaaaa 12909864  T
Q  94 tccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgaggcactagtccaggctagctggggggtggctccgccc 193  Q
    |||||| ||||| |||||||||||  ||||||| || |||||||||||||||||| ||||||||   || | ||||||||||||||||||||||||||||    
T  12909863 tccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgag--cctggcccaggctagctggggggtggctccgccc 12909766  T
Q  194 ctg 196  Q
    |||    
T  12909765 ctg 12909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25391809 - 25392009
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||   |||| |||||||||||||||||||||||||     
T  25391809 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatttgcaagaaatacatttcttgcggaatttacacaaaaatccgcag 25391908  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| |||||||||||  ||||||| || |||||||| ||||||||| |||||||     |||| ||| ||||||||||||||||||||||||||||||    
T  25391909 gaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggcattagcccaggctagctggggggtggctccgcccct 25392008  T
Q  196 g 196  Q
    |    
T  25392009 g 25392009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 37516778 - 37516567
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||              
T  37516778 tttcacatttcctacggatatatctttcctgcggaacctagatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaattccgcag 37516679  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
      ||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||| || | ||     |||||||| ||||||||||| ||||||    
T  37516678 gtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggaaccgagcctgggcactagcccaggctagct-gggggt 37516580  T
Q  184 ggctccgcccctg 196  Q
    |||||||||||||    
T  37516579 ggctccgcccctg 37516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 14461200 - 14461045
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||   |||||||||||||||||| ||||||||||| |    
T  14461200 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggacatacatttcctgcggaatttacataaaaatccgcagg 14461101  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
    ||||  ||||||||||  ||||||| || ||||||||||||||| || ||||||||    
T  14461100 aaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattggagctgag 14461045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26371006 - 26371218
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca- 99  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26371006 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 26371105  T
Q  100 ----------agaaaaa-ctaaaaattctcataatggttggacttgctacaaagaaagttagagctg-----aggcactagtccaggctagctggggggt 183  Q
              ||||||  |||||| ||||  ||||||||||| |||||| ||| |||||| |||| |     ||||||||| ||||||||| ||||||||    
T  26371106 gtaaatccgcagaaaatgctaaaatttctagtaatggttggatttgctaaaaataaagttggagccgagcctaggcactagcccaggctagttggggggt 26371205  T
Q  184 ggctccgcccctg 196  Q
    |||||| ||||||    
T  26371206 ggctccacccctg 26371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 33179141 - 33179265
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||  |||||| ||||||    
T  33179141 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcaggaaaagctaaaagttctagtaatggctggact 33179240  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    ||||||||| |||||| ||||||||    
T  33179241 tgctacaaaaaaagttggagctgag 33179265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7501092 - 7500928
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||              
T  7501092 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaacatccgcat 7500993  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagc 153  Q
      ||||||||| ||||| |||||||||||  |||||||||| |||||||||||||||||| ||||    
T  7500992 gtaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagc 7500928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 193
Target Start/End: Complemental strand, 53068346 - 53068194
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  ||||| ||||  |||||| ||||||    
T  53068346 ggaacctaaattcttggcaaaatctgcaggaaatgtgtttcctgtggaatttacacaaaaatccgcaggaaaagttaaaacttctagtaatggctggact 53068247  T
Q  133 tgctacaaagaaagttagagctgaggcactagtccaggctagctggggggtggctccgccc 193  Q
    || ||||||||||||| ||||||        | ||||||||| ||||||||||||||||||    
T  53068246 tgttacaaagaaagttggagctg--------gcccaggctagatggggggtggctccgccc 53068194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 44625773 - 44625633
Alignment:
Q  62 gaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga----- 156  Q
    |||||||||||||| | ||||||||||||||||| ||| ||||| |||||||||||  |||| ||||| |||||||||||||||||| |||| ||         
T  44625773 gaaatgtgtttcctccagaatttacacaaaaatctgcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctg 44625674  T
Q  157 ggcactagtccaggctagctggggggtggctccgcccctgt 197  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  44625673 ggcactagcccaggctagctggggggtggctccgcccctgt 44625633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 53987953 - 53987799
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagt 147  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||  |||||||||  ||  ||||||||||| |    
T  53987953 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggttgagctgactacaaagaaaat 53987854  T
Q  148 tagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctgt 197  Q
    |  |||||||   | ||||||  ||| |||||||| |||||||||||||||||||    
T  53987853 tgaagctgagcctggactagtgcccaagctagctgaggggtggctccgcccctgt 53987799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 9600438 - 9600286
Alignment:
Q  49 gcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagtt 148  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | |||| ||||  |||||| |||  || ||||||||||| |     
T  9600438 gcaaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaata 9600339  T
Q  149 agagctgag---gcactagt--ccaggctagctggggggtggctccgcccctgt 197  Q
     ||||||||   |  |||||  ||||||||||| ||||||||||||||||||||    
T  9600338 ggagctgagcttgggctagtgcccaggctagct-gggggtggctccgcccctgt 9600286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43700178 - 43700242
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaa 65  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  43700178 tttcacatttccaacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 43700242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 41218389 - 41218456
Alignment:
Q  34 gaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  41218389 gaacctaaattcttggcaaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaatgcgcaag 41218456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 47511667 - 47511773
Alignment:
Q  39 taaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctac 138  Q
    ||||||||| |||||||| |||||||||||||||||| |  |||||| ||||||||||||| ||||| | |||  ||||  |||||| |||||||| |||    
T  47511667 taaatctttagcaaaatccgcaggaaatgtgtttccttcaaaatttatacaaaaatccgcaggaaaagcgaaaggttctagtaatggctggacttgttac 47511766  T
Q  139 aaagaaa 145  Q
    |||||||    
T  47511767 aaagaaa 47511773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 35077313 - 35077267
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaat 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  35077313 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 35077267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 38239555 - 38239485
Alignment:
Q  35 aacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaa 105  Q
    |||||||||| ||||||||||| |||| ||||||||||||||| |||||||||| ||||||| ||| ||||    
T  38239555 aacctaaatccttggcaaaatccgcagaaaatgtgtttcctgcagaatttacactaaaatccacaaaaaaa 38239485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 43700228 - 43700333
Alignment:
Q  90 aaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag-----gcactagtccaggctagctggggggtg 184  Q
    |||||| ||| ||||| |||||||||||  |||||||||| |||||||||||||||||| |||| |||     |||||||||||||||| || |||||||    
T  43700228 aaaatctgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgagcactagtccaggctaact-gggggtg 43700326  T
Q  185 gctccgc 191  Q
    |||||||    
T  43700327 gctccgc 43700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 26278452 - 26278403
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 97  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  26278452 ggcaaaatctgcaggaaatgtgtttcctccggaatttacataaaaatccg 26278403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 41358632 - 41358700
Alignment:
Q  34 gaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaa-tttacacaaaaatccgcaag 101  Q
    ||||||||||| ||||||||||| |||||||||||||||   | |||| |||||||||| |||||||||    
T  41358632 gaacctaaatcattggcaaaatccgcaggaaatgtgtttttggaggaattttacacaaatatccgcaag 41358700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 7500910 - 7500875
Alignment:
Q  157 ggcactagtccaggctagctggggggtggctccgcc 192  Q
    |||||||| |||||||||||||||||||||||||||    
T  7500910 ggcactagcccaggctagctggggggtggctccgcc 7500875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 36870023 - 36869966
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa 90  Q
    |||||||||||| ||| |||||||   |||||| | ||||||||||||||||||||||    
T  36870023 ggaacctaaatccttgacaaaatccttaggaaacgggtttcctgcggaatttacacaa 36869966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 41218539 - 41218568
Alignment:
Q  167 caggctagctggggggtggctccgcccctg 196  Q
    ||||||||||||||||||||||||||||||    
T  41218539 caggctagctggggggtggctccgcccctg 41218568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 43447660 - 43447620
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttc 73  Q
    |||| ||||||| |||||||||||||||||||| |||||||    
T  43447660 ggaagctaaatccttggcaaaatctgcaggaaacgtgtttc 43447620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 34248998 - 34249195
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    |||||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  34248998 tttcatattttctacggatatatctttcctgtggaacctaaacccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcag 34249097  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgccc 193  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||| ||| |||     |||||||| ||| ||||||||||||||||||||||||    
T  34249098 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctgggcactagcccaagctagctggggggtggctccgccc 34249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1781007 - 1781207
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||     
T  1781007 tttcacatttcctacggatatatcttttatgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatccacag 1781106  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| |||||| || |  ||||||||||  ||||||||||||||||| |||| ||     |||||||| |||| |||||||||||||||||||||||||    
T  1781107 gaaaagctaaaatttatagtaatggttgggtttgctacaaagaaagttggagccgaacctgggcactagcccagactagctggggggtggctccgcccct 1781206  T
Q  196 g 196  Q
    |    
T  1781207 g 1781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 23663744 - 23663944
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| |||| ||||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23663744 tttcacattttctacggatatatctttcttacggaacataaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 23663843  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccct 195  Q
    ||||| ||||||||| |   ||||||||| |||||||||||||||||| |||| ||     |||||||| |||||||||||||||||||||||| |||||    
T  23663844 gaaaagctaaaaattatagcaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctcctcccct 23663943  T
Q  196 g 196  Q
    |    
T  23663944 g 23663944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 10397808 - 10397977
Alignment:
Q  32 cggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggac 131  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||      
T  10397808 cggaacctaaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatccgcaggaaaagctaaaaattctcgtaatggttgggt 10397907  T
Q  132 ttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
    ||||||||||||||||| |||||||     |||||||| |||||||||||||||||||||||||||||||    
T  10397908 ttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 10397977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 9696186 - 9695975
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa--------- 91  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||             
T  9696186 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatctgcag 9696087  T
Q  92 ---aatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
       |||||||| ||||| ||||||||||| |||||| |||| |||||||||||||||||| |||| ||     |||||||| ||||||||||| ||||||    
T  9696086 gtaaatccgcaggaaaatctaaaaattctaataatgattgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagct-gggggt 9695988  T
Q  184 ggctccgcccctg 196  Q
    | |||||||||||    
T  9695987 gactccgcccctg 9695975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2941353 - 2941255
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  2941353 tttcacatttcctacggatatatctttcatgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacactaaaatccgca 2941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 9046900 - 9047111
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| ||||||||| ||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||              
T  9046900 tttcacatttcctacagatatatatttcttgcggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctacacaaaaatctacag 9046999  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
      ||||||||| ||||| |||||||||||  |||||||||||||| ||||||||||||||  ||||||     | |||||| ||||||||||| ||||||    
T  9047000 gtaaatccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgagtctggacactagcccaggctagct-gggggt 9047098  T
Q  184 ggctccgcccctg 196  Q
    |||||||||||||    
T  9047099 ggctccgcccctg 9047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 15529076 - 15528879
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa----------- 90  Q
    |||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||               
T  15529076 ttcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaacatccgcagg 15528977  T
Q  91 -aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgaggcactagtccaggctagctggggggtggctcc 189  Q
     ||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||| |||       | ||| ||||||||| ||||||||||||||    
T  15528976 taaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggag-------attagcccaggctag-tggggggtggctcc 15528885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 15122168 - 15122076
Alignment:
Q  7 atttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  15122168 atttcctacggatatatctttcctgcggaacgtaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatccgca 15122076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 14938943 - 14939092
Alignment:
Q  49 gcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagtt 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||| ||||  |||||| | |  |||||||||||||| ||    
T  14938943 gcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatcagcataaaaaactaaaagttctagtaatggctaggtttgctacaaagaaaatt 14939042  T
Q  149 agagctgag---gcacta--gtccaggctagctggggggtggctccgccc 193  Q
     ||||||||   |  |||  ||||||||||||||||||||||||||||||    
T  14939043 ggagctgagcctgagctagtgtccaggctagctggggggtggctccgccc 14939092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 339434 - 339311
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||| |||||| || |  |||||| ||   |    
T  339434 ggaacctaaatccttggtaaaatctgcaggaaatgtatttcctacggaatttacacaaaaatccacaggaaaagctaaaagttttagtaatggctgagtt 339335  T
Q  133 tgctacaaagaaagttagagctga 156  Q
    ||||||||||||||||||||||||    
T  339334 tgctacaaagaaagttagagctga 339311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 2836217 - 2836283
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  2836217 ggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaatttacacgaaaatccgca 2836283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 2960768 - 2960659
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagt 147  Q
    ||||||||  ||||||||||||||| ||||| |||||||| || |||||||| ||||| |||||| ||||  || ||| ||||||||||||||||||| |    
T  2960768 ggcaaaattagcaggaaatgtgttttctgcgaaatttacataataatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaat 2960669  T
Q  148 tagagctgag 157  Q
    | ||||||||    
T  2960668 tggagctgag 2960659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 24965163 - 24964966
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaa 100  Q
    ||||| ||||||| |  ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24965163 tttcacatttcctgcaaatatatctttcctgcggaacctaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcag 24965064  T
Q  101 gaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgccc 193  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||| |||| ||     |||||||| |||||||||||||| |||||||||||||    
T  24965063 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggtggtggctccgccc 24964966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 28928190 - 28927990
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcagg-aaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  28928190 tttcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactccgca 28928091  T
Q  100 agaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccc 194  Q
     ||||| |||||||||||  |||||||| | |||||||||||||||||| |||| ||     |||||||| ||||  ||||| |||||||||||||||||    
T  28928090 ggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttggagccgagcctgggcactagcccagaatagct-gggggtggctccgcccc 28927992  T
Q  195 tg 196  Q
    ||    
T  28927991 tg 28927990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 34282913 - 34283081
Alignment:
Q  32 cggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggac 131  Q
    |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||  |||||  |||||    
T  34282913 cggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacactaaaatccgcaagaaaagctaaaagttctagtaatgactggac 34283012  T
Q  132 ttgctacaaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccct 195  Q
    ||||||||||||||||| ||||||||   |  |||||  ||||||||||||||||||||||||||||||    
T  34283013 ttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccct 34283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36406474 - 36406686
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------- 90  Q
    ||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||              
T  36406474 tttcacatttcctacggatatatctttcctgcggaacctcaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaatatccgcag 36406573  T
Q  91 --aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggt 183  Q
      |||||| || ||||| ||||||||| |  ||||| |||| |||||||||||||||||| |||| ||     |||||||| ||||||||||||||||||    
T  36406574 gtaaatccacaggaaaagctaaaaattatagtaatgtttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggt 36406673  T
Q  184 ggctccgcccctg 196  Q
    |||||||||||||    
T  36406674 ggctccgcccctg 36406686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 38214840 - 38214689
Alignment:
Q  50 caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagtta 149  Q
    |||||||||||||||||||||||  ||| ||||||||| ||||||||||| ||||| |||||| ||||  || ||| ||||||||||||||||||| ||     
T  38214840 caaaatctgcaggaaatgtgttttatgcagaatttacataaaaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattg 38214741  T
Q  150 gagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    ||||||||   |  |||||  |||||||||||||||||||||||||||||||    
T  38214740 gagctgagcccgggctagtgcccaggctagctggggggtggctccgcccctg 38214689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 3384005 - 3384172
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca-- 99  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| || |||||   |||  ||| |||||||||||||||||||||      
T  3384005 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctacatgaaatacattttttgcagaatttacacaaaaatccgcagg 3384104  T
Q  100 ---------agaaaaa-ctaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
             ||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  3384105 taaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgag 3384172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 27321882 - 27321991
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagt 147  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |  |||||| ||| ||||||||||||||| |    
T  27321882 ggcaaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaat 27321981  T
Q  148 tagagctgag 157  Q
    | ||||||||    
T  27321982 tggagctgag 27321991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 13243192 - 13243126
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13243192 ggaacctaaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttacacaaaactccgca 13243126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 39431679 - 39431745
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  39431679 ggaacctaaatctttggcaaaatctgcacgaaatgtgtttcctacggaatttacacaaaactccgca 39431745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 21138075 - 21138243
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| ||||||||||  |||||||| ||||||| |||| |||||||||  ||||||||| ||||| | | |  ||||  |||||||| | ||    
T  21138075 ggaacctaaatccttggcaaaattcgcaggaaacgtgtttcatgcgaaatttacacccaaatccgcaggaaaagcaagaggttctagtaatggttaggct 21138174  T
Q  133 tgctacaaagaaagttagagctgag---gcacta--gtccaggctagctggggggtggctccgcccctg 196  Q
    |||||||||||||||   |||||||   | ||||  | | | |||||||||||||||||||||||||||    
T  21138175 tgctacaaagaaagtagaagctgagcctggactaatgcctatgctagctggggggtggctccgcccctg 21138243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 31500854 - 31500902
Alignment:
Q  39 taaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 87  Q
    |||||| ||||||||||| | |||||||||||||||||| |||||||||    
T  31500854 taaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttaca 31500902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 11653 - 11456
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||||| ||||||| ||    
T  11653 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcattttctgcggaatttacacaataatccgc-ag 11555  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtggctccgcccctg 196  Q
     ||||  |||||||||  ||||||| || |||||||||||||||||| |||||||     |||||||||||||||||||| |||||||||||||||||||    
T  11554 gaaaagaaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagtccaggctagct-gggggtggctccgcccctg 11456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 7040 - 6888
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||||| |||||||| |    
T  7040 ttcacatttcctacggatatatccttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcatttccttcggaatttacacaataatccgcagg 6941  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagct 154  Q
    |||| |||||||||||  ||||||| || |||||||||||||||||| |||||    
T  6940 aaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagct 6888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 1825 - 1670
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaag 101  Q
    |||| |||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |    
T  1825 ttcacatttcctacggatatatctttcctgcggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaagg 1726  T
Q  102 aaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgag 157  Q
    ||||  |||||||| | |||||| |||| ||| |||||||||||||| ||||||||    
T  1725 aaaaggtaaaaattttaataatgattgggctttctacaaagaaagttggagctgag 1670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 35300414 - 35300625
Alignment:
Q  2 ttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa----------- 90  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||               
T  35300414 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcagg 35300513  T
Q  91 -aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctga-----ggcactagtccaggctagctggggggtg 184  Q
     ||||||||| ||||| ||||| |||||  ||||||| || |||||||||||||||||| |||||||     |||||||| |||||||||||||||||||    
T  35300514 taaatccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtg 35300613  T
Q  185 gctccgcccctg 196  Q
    ||||||||||||    
T  35300614 gctccgcccctg 35300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 23704454 - 23704549
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 96  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  23704454 tttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttacacaaaaatcc 23704549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26722923 - 26723134
Alignment:
Q  1 tttcatatttcctacggatatatctttcatgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgc-- 98  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||      
T  26722923 tttcacatttcttacggatatatctttcctgcggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcag 26723022  T
Q  99 ----------aagaaaaactaaaaattctcataatggttggacttgctacaaagaaagttagagctgaggc-----actagtccaggctagctggggggt 183  Q
              | ||||| |||||| ||||  ||||||||||| |||||||||| |||||| |||| ||| |     ||||| ||||||||||| ||||||    
T  26723023 gtaaatccgtaggaaaagctaaaatttctagtaatggttggatttgctacaaaaaaagttggagccgagcctggaaactagcccaggctagct-gggggt 26723121  T
Q  184 ggctccgcccctg 196  Q
    |||||||||||||    
T  26723122 ggctccgcccctg 26723134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 815002 - 815126
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||| | ||||| |||||| ||||  |||||| | || |    
T  815002 ggaacctaaattcttggcaaaatctgcaagaaatgtattttctgcggaatttacacaaaaatccgtaggaaaagctaaaagttctagtaatggctagatt 815101  T
Q  133 tgctacaaagaaagttagagctgag 157  Q
    |||||||||||||||| ||||||||    
T  815102 tgctacaaagaaagttggagctgag 815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 41759624 - 41759804
Alignment:
Q  32 cggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc------------gcaagaaaaactaaaaattctca 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||            ||||||||| |||||| ||||      
T  41759624 cggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatccacaagtaaatctgcaagaaaagctaaaagttctag 41759723  T
Q  120 taatggttggacttgctacaaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    |||||| ||| |||||||||||||||||| ||||||||   |  |||||  ||||||||||| |||||||||||||||||||    
T  41759724 taatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagct-gggggtggctccgcccctg 41759804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 21688211 - 21688129
Alignment:
Q  35 aacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattct 117  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  21688211 aacctaaatccttcgcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaagttct 21688129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 21932798 - 21932919
Alignment:
Q  35 aacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttg 134  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||||  ||||| || |  |||||||||| ||||    
T  21932798 aacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaatat-cgcaggaaaagttaaaagttttagtaatggttgggcttg 21932896  T
Q  135 ctacaaagaaagttagagctgag 157  Q
    |||||||||||||| ||| ||||    
T  21932897 ctacaaagaaagttggagttgag 21932919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 42439591 - 42439706
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggact 132  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| || ||| | |||||||||| ||||  |||||| ||  |     
T  42439591 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaaactaaaagttctagtaatggctgagca 42439690  T
Q  133 tgctacaaagaaagtt 148  Q
    ||||||||||||||||    
T  42439691 tgctacaaagaaagtt 42439706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 5991440 - 5991602
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa---------aaatccgcaagaaaaactaaaaattctcataatggttggacttgctac 138  Q
    |||||||||||||||||||||||||||||||||||||||| ||         ||||||||| |||||||||||| ||||  |||||| ||| ||||||||    
T  5991440 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaccgcaggtaaatccgcaggaaaaactaaaagttctagtaatggctgggcttgctac 5991539  T
Q  139 aaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgcccctg 196  Q
    ||||||| || ||| ||||   |  |||||  |||||||||||||||||||||||||||||||    
T  5991540 aaagaaaattggagttgagcctgggctagtgcccaggctagctggggggtggctccgcccctg 5991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 28694057 - 28694123
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28694057 ggaacctaaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgca 28694123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 38991174 - 38991255
Alignment:
Q  30 tgcggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaa 111  Q
    |||||| |||||||| |||||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||| |||||    
T  38991174 tgcggatcctaaatccttggcaaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgcaggaaaagctaaa 38991255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 38129010 - 38129085
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaact 108  Q
    |||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||| | ||||||    
T  38129010 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatccgcaggtaaaact 38129085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 30852426 - 30852317
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagt 147  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||  ||||| ||||  |||||| ||  ||| ||||||||||| |    
T  30852426 ggcaaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaat 30852327  T
Q  148 tagagctgag 157  Q
    | ||||||||    
T  30852326 tggagctgag 30852317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 3012408 - 3012346
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 95  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3012408 ggaacctatatccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaatc 3012346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 4843402 - 4843338
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccg 97  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||| |||||    
T  4843402 ggaacctaaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtacacaaatatccg 4843338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 7873240 - 7873291
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  7873240 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaacccgca 7873291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 19377490 - 19377427
Alignment:
Q  36 acctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||| |||||||    
T  19377490 acctaaatccttggcaaaatctgcaggaaatgtatttccttcggaatttccacaaacatccgca 19377427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 22206709 - 22206868
Alignment:
Q  51 aaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcataatggttggacttgctac 138  Q
    ||||||||||||||||||||||||||||||||||||| ||            ||||||||| ||||| ||||||||| |  |||||  ||| ||||||||    
T  22206709 aaaatctgcaggaaatgtgtttcctgcggaatttacataaacactcgtaggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctac 22206808  T
Q  139 aaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgccc 193  Q
    ||||||| || ||||||||   |  |||||  |||||||||||||| |||||||||||||    
T  22206809 aaagaaaattggagctgagcctgggctagtgcccaggctagctgggtggtggctccgccc 22206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 22228030 - 22227871
Alignment:
Q  51 aaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaagaaaaactaaaaattctcataatggttggacttgctac 138  Q
    ||||||||||||||||||||||||||||||||||||| ||            ||||||||| ||||| ||||||||| |  |||||  ||| ||||||||    
T  22228030 aaaatctgcaggaaatgtgtttcctgcggaatttacataaacactcgtaggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctac 22227931  T
Q  139 aaagaaagttagagctgag---gcactagt--ccaggctagctggggggtggctccgccc 193  Q
    ||||||| || ||||||||   |  |||||  |||||||||||||| |||||||||||||    
T  22227930 aaagaaaattggagctgagcctgggctagtgcccaggctagctgggtggtggctccgccc 22227871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 25688210 - 25688249
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 87  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  25688210 ggcaaaatctgcaggaaatatgtttcctgcggaatttaca 25688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 3012338 - 3012281
Alignment:
Q  91 aaatccgcaagaaaaactaaaaattctcataatggttggacttgctacaaagaaagtt 148  Q
    ||||||||| ||||| |||||| ||||  |||||||||| ||||||||||||||||||    
T  3012338 aaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagtt 3012281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 4194 - 4143
Alignment:
Q  48 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  4194 ggcaaaatctgcaggaaatgtgtttcctacggaatttacataaacatccgca 4143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 109316 - 109382
Alignment:
Q  33 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgca 99  Q
    |||||||||||  || ||||||||||||| | |||||||| ||||||||||||||||||||| ||||    
T  109316 ggaacctaaattcttagcaaaatctgcagaacatgtgttttctgcggaatttacacaaaaattcgca 109382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University