View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_5 (Length: 611)
Name: NF9868_low_5
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 21445127 - 21445715
Alignment:
| Q |
1 |
agagagaataccctactacctttgaggagcaccagaaaggattggatcagctgaactatgctttcctaatgcaggaatactaagagaacgttttcttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445127 |
agagagaataccctactacctttgaggagcaccagaaaggattggatcagctgaactatgctttcctaatgcaggaatactaagagaacgttttcttaat |
21445226 |
T |
|
| Q |
101 |
ttggctctaccatttgatgatagtttcttctcactcttttcagcaagtaacgaaggataagcgcaaaagggttcttgagatgccactgctattggcaccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445227 |
ttggctctaccatttgatgatagtttcttctcactcttttctgcaagtaacgaaggataagcgcaaaagggttcttgagatgccactgcta--------- |
21445317 |
T |
|
| Q |
201 |
ctattggcaccggctcacttctagttctaaggaattggtcgagattttggcggtatttaatcccatggattttagctccaagctccacaacatcaagctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445318 |
---ttggcaccggctcacttctagttctaaggaattggtcgagattttggcggtatttaatcccatggattttagctccaagctccacaacatcaagctt |
21445414 |
T |
|
| Q |
301 |
ggtctttaactcatagtcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcg |
400 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445415 |
ggtctttaactcgtaatcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcg |
21445514 |
T |
|
| Q |
401 |
tctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtca |
500 |
Q |
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| T |
21445515 |
tctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtca |
21445614 |
T |
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| Q |
501 |
aatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtgctgc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21445615 |
aatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtggtgc |
21445714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 40686896 - 40686811
Alignment:
| Q |
317 |
tcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtc |
402 |
Q |
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|||||||||| |||||| ||| |||| |||||||| |||||| | ||| || ||||||||||||||||| |||||||||||||| |
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| T |
40686896 |
tcatcatctgaccaatatccactttcaggcacatcttgcattgccaaatcatcatactcttcatcagacttggttgattcctcgtc |
40686811 |
T |
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