View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_6 (Length: 606)
Name: NF9868_low_6
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 15 - 588
Target Start/End: Original strand, 31760965 - 31761541
Alignment:
| Q |
15 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
114 |
Q |
| |
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|||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31760965 |
cagatagaacaactaagtctttaaggttaagtccatgagacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
31761064 |
T |
|
| Q |
115 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccagctgttaattgatgaaagcaaaatttctt |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31761065 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccagctgttaaatgatgaaagcaaaatttctt |
31761164 |
T |
|
| Q |
215 |
agtttctagggttatatatactactccaaatttaccaatnnnnnnnntatagtagtcgaaatttcagttttgatcgcggttaaatgcagtctatgtattc |
314 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31761165 |
agttgctagggttatatatactactccaaattcaccaataaaaaaaatatactactcgaaatttcagttttgatc-cggttaaatgcagtctatgtattc |
31761263 |
T |
|
| Q |
315 |
aaaattgcggttata----gaccttaaaatcttttatattttctgaaacaaccgtggttacacaaattaaaaccttgtttagaagtgaaaaatatttgaa |
410 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761264 |
aaaattgcggttatatatagacctcaaaatcttttatattttctgaaacaactgtggttacacaaattaaaaccttgtttagaagtgaaaaatatttgaa |
31761363 |
T |
|
| Q |
411 |
agacttacaatggcaacagagtctcgagcagctatagctaaaatatcggcgcatgatacgacatcgcgtttgcaagctttggtaactgcagctttgattt |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
31761364 |
agacttacaatggcaacagagtctcgagcagctatagctaaaatatcggcgcatgatacgacatcgcgtttgcaagctttggtaactgcttctttaattt |
31761463 |
T |
|
| Q |
511 |
gatcaacgacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggtaggggtatcat |
588 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761464 |
gatcaacaacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggtaggggtatcat |
31761541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 31749751 - 31749520
Alignment:
| Q |
15 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
31749751 |
cagatagaacaactaagtccttaaggtttagtccatgtgacttgaaatttttgatgagttgtgagaagttaaagaatggaggaggaagatttgtatttgc |
31749652 |
T |
|
| Q |
115 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccagctgttaattgatgaaagcaaaatttctt |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31749651 |
tgcatctctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccagctgttaaatgatgaaagcaaaatttctt |
31749552 |
T |
|
| Q |
215 |
agtttctagggttatatatactactccaaatt |
246 |
Q |
| |
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|||| |||| |||| ||| |||| || ||||| |
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| T |
31749551 |
agttgctagtgttacatacactattcgaaatt |
31749520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 393 - 588
Target Start/End: Original strand, 31768182 - 31768377
Alignment:
| Q |
393 |
aagtgaaaaatatttgaaagacttacaatggcaacagagtctcgagcagctatagctaaaatatcggcgcatgatacgacatcgcgtttgcaagctttgg |
492 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31768182 |
aagtgcaaaatattggaaagacttacaatggcaacagagtctcgagctgctatagctaaaatatcggcacatgatacgacatcgcgtttgcaagctttgg |
31768281 |
T |
|
| Q |
493 |
taactgcagctttgatttgatcaacgacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggtaggggtatcat |
588 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
31768282 |
taactgcagctttgatttgatcaacaacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggtaggggtgtcat |
31768377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 283 - 552
Target Start/End: Complemental strand, 31749463 - 31749183
Alignment:
| Q |
283 |
tttgatcgcggttaaatgcagtctatgtattcaaaattgcggttatagaccttaaaatcttttatattt-------tctgaaacaacc----gtggttac |
371 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||| |
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| T |
31749463 |
tttgatcgcggttaaatgcagtcgatgtattcaaaattgcggttatagacctcaaaatcttttatattgctgcaagtctgcaacaatatattgtggttat |
31749364 |
T |
|
| Q |
372 |
acaaattaaaaccttgtttagaagtgaaaaatatttgaaagacttacaatggcaacagagtctcgagcagctatagctaaaatatcggcgcatgatacga |
471 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||| || |||||||| | |
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| T |
31749363 |
gcaatttaaaaccttgtttagaagtgcaaaatattggaaagacttactatggcaacggaatctcgagctgctatagctaaaatatctgcacatgatacta |
31749264 |
T |
|
| Q |
472 |
catcgcgtttgcaagctttggtaactgcagctttgatttgatcaacgacctcaaaacctctaattgaattgatatttggaa |
552 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31749263 |
catcacgtttgcaagctttggtaactgcagctttgatttgatcaacgacctcaaaacttctaattgaattgatatttggaa |
31749183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 31767718 - 31767900
Alignment:
| Q |
15 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
114 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
31767718 |
cagatagaacaactaaatctttaaggtttagtccatgtgacttgaaatttgtgatgagttgtgagaagttaaagaatggaggaggaagatttgtatttgc |
31767817 |
T |
|
| Q |
115 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccagctgttaattga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31767818 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccaactgttaattga |
31767900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 31753353 - 31753537
Alignment:
| Q |
15 |
cagagagaacaactaagtccttaaggtttagtccatgcgacttgaaatttgtgatgagttgtgagaaattgaaaaatggaggaggaagatttgtatttgc |
114 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| || |||| ||||||| ||||||||||||||| || ||||||| || ||||||||| ||||||| |
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| T |
31753353 |
cagatagaacaactaagtctttaaggtttagtccttgagactgaaaatttgcgatgagttgtgagaagttaaaaaatgccggtggaagatttatatttgc |
31753452 |
T |
|
| Q |
115 |
tgcatccctgcttgcaaatcttgaatctcttcttcctagtaacacttggtaccaatattgcttaccacccagctgttaattgatg |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| | ||| |||| ||||||||||||| |
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|
| T |
31753453 |
tgcatctctgcttgcaaatcttgaatctcttctgcccagtaacacttggtaccaatatttgtgaccgcccaactgttaattgatg |
31753537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 402 - 588
Target Start/End: Original strand, 31753879 - 31754065
Alignment:
| Q |
402 |
atatttgaaagacttacaatggcaacagagtctcgagcagctatagctaaaatatcggcgcatgatacgacatcgcgtttgcaagctttggtaactgcag |
501 |
Q |
| |
|
||||| |||| |||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||| || ||||| ||||||||| |||||| | |
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|
| T |
31753879 |
atattggaaatacttactatggcaacagaatctcgagctgctatagctaagatatctgcacatgatatgatcggacgtttacaagctttgtcaactgcgg |
31753978 |
T |
|
| Q |
502 |
ctttgatttgatcaacgacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggtaggggtatcat |
588 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
31753979 |
ctttaatttgatcaacaacctcaaaacctctaagtgaattgatatttggaattgcagtcttctcaccaatgaaggtaggggtgtcat |
31754065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 27887907 - 27887869
Alignment:
| Q |
133 |
tcttgaatctcttcttcctagtaacacttggtaccaata |
171 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
27887907 |
tcttgcatctcttcttcctagtagcacttggtaccaata |
27887869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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