View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_7 (Length: 523)
Name: NF9868_low_7
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Original strand, 26566581 - 26567071
Alignment:
| Q |
20 |
gccaatgctttatggcaatggggtcacttcatccgcagtctaacacagctcttcaatgtatacgtaccggaccttgttttcttcggagggtcatacacgt |
119 |
Q |
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| T |
26566581 |
gccaatgctttatggcaatggggtcacttcatccgcagtctaacacagctcttcaatgtatacgtaccggaccttgttttcttcggagggtcatacacgt |
26566680 |
T |
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| Q |
120 |
ctcgacccgaaagaactgaaggatttcaagctgagtgtgtgatgaaggtaatggaaatgaagtgtgtgaggagtgtgagtgttgtggggttgagttatgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26566681 |
ctcgacccgaaagaactgaaggatttcaagctgagtgtgtgatgaaggtaatggaaatgaagtgtgtgaggagtgtgagtgttgtggggttgagttatgg |
26566780 |
T |
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| Q |
220 |
tgggtttgtggcgtatagtttaggtgttaagtataaagagtttgtggagaaggttgtgatttgtggatcaggtgtgagtttggaagagaaggatataaaa |
319 |
Q |
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| T |
26566781 |
tgggtttgtggcatatagtttaggtgttaagtataaagagtttgtggagaaggttgtgatttgtggttcaggtgtgagtttggaagagaaggatataaaa |
26566880 |
T |
|
| Q |
320 |
gatggnnnnnnncctgtttctgatttggatgaagctgctaatattttggtgccacaaactccacaaaagcttagggaactttttggatatgcnnnnnnnc |
419 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26566881 |
gatggtttttttcctgtttctgatttggatgaagctgctaatattttggtgccacaaactccacaaaagcttagggaactttttggatatgctttttttc |
26566980 |
T |
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| Q |
420 |
gaccacgtcgtttggcttggttgccctcttgcttcctccatgatttcattcatgtaagtttgtttcttatttataaatttcatgcaagtct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26566981 |
gaccacgtcgtttggcttggttgccctcttgcttcctccatgatttcattcatgtaagtttgtttcttatttataaatttcatacaagtct |
26567071 |
T |
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