View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_high_12 (Length: 382)
Name: NF9869_high_12
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 364
Target Start/End: Complemental strand, 298551 - 298193
Alignment:
| Q |
6 |
actctatggataaaaagtgtggtgcaagtggtgtggttttggtgttgttggtgttagtattcttgagcttatctatagctaatgtgaatggagattcggt |
105 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
298551 |
actctatggataaaaagcgtggtgcaagcggtgtggttttggtgttgttggtgttagtattcttgagcttctctatagctaatgtgaatggagattcggt |
298452 |
T |
|
| Q |
106 |
taatgatgaagatcagagcaagaaatcagctttttgggtgtggcagagactaagaagtgcatattctatgtattcatcagttttccctacaagtattgga |
205 |
Q |
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| T |
298451 |
taatgatgaagatcagagcaagaaatcagctttttgggtgtggcagagactaagaagtgcatattctatgtattcatcagttttccctacaagtattgga |
298352 |
T |
|
| Q |
206 |
caatattggcacatggttaaggccattgtcaatcacacttatacttatttcttccctccaaatatagagtaagctactactaaccttctccatctcaata |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298351 |
caatattggcacatggttaaggccattgtcaatcacacttatacttatttcttccctccaaatatagagtaagctactactaaccttctccatctcaata |
298252 |
T |
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| Q |
306 |
tatttatttagtattctcatatcaaccttgtgcttttattttcatagcatattattgta |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298251 |
tatttatttagtattctcatatcaaccttgtgcttttattttcatagcatattattgta |
298193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 358
Target Start/End: Original strand, 38104362 - 38104714
Alignment:
| Q |
6 |
actctatggataaaaagtgtggtgcaagtggtgtggttttggtgttgttggtgttagtattcttgagcttatctatagctaatgtgaatggagattcggt |
105 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| || |
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| T |
38104362 |
actctatggataaaaagcttggtgcaagtggtgtggttttgg---------tgttagtattcttcagcttcactatagctaatgtgaatggagattcagt |
38104452 |
T |
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| Q |
106 |
taatgatgaagatcagagcaagaaatcagctttttgggtgtggcagagactaagaagtgcatattctatgtattcatcagttttccctacaagtattgga |
205 |
Q |
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|||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
38104453 |
taatgatgaagatcagagtaagaaatcagctttgtgggtatggcagagactaagaaatgcatattctatgtattcatcagttttcccaacaaatattgga |
38104552 |
T |
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| Q |
206 |
caatattggcacatggttaaggccattgtcaatcacacttatacttatttcttccctccaaatatagagtaagctactactaaccttctccatctcaata |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
38104553 |
caatattggcacatggttaaggccattgtcaatcacacttatgcttatttcttccctccaaatctagagtaag---ctactaaccttctccatctcaata |
38104649 |
T |
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| Q |
306 |
------------tatttatttagtattctcatatcaaccttgtgcttttattttcatagcatatt |
358 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38104650 |
tatttatttatttatttatttagtattctcatttcaaccttgtgcttttattttcatagcatatt |
38104714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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