View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_high_13 (Length: 370)
Name: NF9869_high_13
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 30877686 - 30877349
Alignment:
| Q |
18 |
aaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttga |
117 |
Q |
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| T |
30877686 |
aaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgaggcagaaaggaggagaagagctaggattaatgcacatcttga |
30877587 |
T |
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| Q |
118 |
tactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacatcttcctttctttaatcattgagaaaagtaatttaactcca |
217 |
Q |
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| T |
30877586 |
tactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacatcatcctttctttaatcattcagaaaagtaatttaactcca |
30877487 |
T |
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| Q |
218 |
tgtttggataaaacctaaattaagcacttataaggtaagtacttatcacattaatgcttaattattttttaataaccaattatattggtgtgaagtatcc |
317 |
Q |
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| T |
30877486 |
tgtttggataaaacctaaattaagcacttataaggtaagtacttatcacattaatgcttaattattttttaataaccaattatattggtgtgaagtatcc |
30877387 |
T |
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| Q |
318 |
accaaccaatatccacaatgaaatctaactagtgatgt |
355 |
Q |
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| T |
30877386 |
accaaccaatatccacaatgaaagctaactagtgatgt |
30877349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 39332828 - 39332708
Alignment:
| Q |
41 |
gagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccag |
140 |
Q |
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| T |
39332828 |
gagagaagtattgaagctttgaagaatcatagtgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgttattccag |
39332729 |
T |
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| Q |
141 |
gtgctttgaaggttagttcaa |
161 |
Q |
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| T |
39332728 |
gggctaataaggttagttcaa |
39332708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 12102570 - 12102483
Alignment:
| Q |
43 |
gagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtc |
133 |
Q |
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| T |
12102570 |
gagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaattaatttacatcttgatacacttcgtagtgtc |
12102483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 17146508 - 17146474
Alignment:
| Q |
41 |
gagagaagtgttgaagctttgaagaatcatagtga |
75 |
Q |
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| T |
17146508 |
gagagaagtattgaagctttgaagaatcatagtga |
17146474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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