View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_high_17 (Length: 297)
Name: NF9869_high_17
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_high_17 |
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| [»] scaffold0482 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 7773971 - 7774267
Alignment:
| Q |
1 |
agaagttcaagctatattattgtcaactctactcctat----cctatccttcagcagctc--catatatgggaaaggctgatccagatgattctatttca |
94 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
7773971 |
agaagctcaagctatattattgttaactctactcctatatctcctatcctgcagcagctctccatatatggaaaaggctgatccagatgattctatttca |
7774070 |
T |
|
| Q |
95 |
ttgtcacatgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774071 |
ttgtcacatgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagag |
7774170 |
T |
|
| Q |
195 |
aaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774171 |
aaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
7774267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 7811203 - 7811499
Alignment:
| Q |
1 |
agaagttcaagctatattattgtcaactctactcctat----cctatccttcagcagctc--catatatgggaaaggctgatccagatgattctatttca |
94 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7811203 |
agaagctcaagctatattattgttaactctactcctatatctcctatcctgcagtagctctccatatatgggaaaggctgatccagatgattctatttca |
7811302 |
T |
|
| Q |
95 |
ttgtcacatgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7811303 |
ttgtcacatgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagag |
7811402 |
T |
|
| Q |
195 |
aaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7811403 |
aaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
7811499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 7790625 - 7790914
Alignment:
| Q |
8 |
caagctatattattgtcaactctactcctat----cctatccttcagcagctc--catatatgggaaaggctgatccagatgattctatttcattgtcac |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7790625 |
caagctatattattgttaactctactcctatatctcctatcctgcagcagctctccatatatggaaaaggctgatccagatgattctatttcattgtcac |
7790724 |
T |
|
| Q |
102 |
atgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagagaaggtac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7790725 |
atgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagagaaggtac |
7790824 |
T |
|
| Q |
202 |
cattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7790825 |
cattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
7790914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 1288 - 999
Alignment:
| Q |
8 |
caagctatattattgtcaactctactcctat----cctatccttcagcagctc--catatatgggaaaggctgatccagatgattctatttcattgtcac |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1288 |
caagctatattattgttaactctactcctatatctcctatcctgcagcagctctccatatatggaaaaggctgatccagatgattctatttcattgtcac |
1189 |
T |
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| Q |
102 |
atgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagagaaggtac |
201 |
Q |
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| T |
1188 |
atgcaatgtgctttgttggattgactgtgatttccatgattaatgaggtaatttttctctttgtatttgtagtggacattttgtatcatagagaaggtac |
1089 |
T |
|
| Q |
202 |
cattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1088 |
cattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatcatggtgtgattcattgcaatg |
999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 33184924 - 33184830
Alignment:
| Q |
172 |
agtggacattttgtatcatagagaaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgatca |
271 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33184924 |
agtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatgggtgg-----cataaacccttaaatgaagaagctcttgatgatca |
33184830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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