View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9869_high_29 (Length: 211)

Name: NF9869_high_29
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9869_high_29
NF9869_high_29
[»] chr6 (10 HSPs)
chr6 (31-173)||(7048029-7048171)
chr6 (141-211)||(7048340-7048410)
chr6 (5-211)||(7048196-7048395)
chr6 (109-166)||(7042640-7042696)
chr6 (73-117)||(7042561-7042605)
chr6 (2-77)||(7047986-7048062)
chr6 (14-90)||(7048165-7048242)
chr6 (129-172)||(7048162-7048205)
chr6 (57-143)||(2924144-2924230)
chr6 (73-125)||(9171939-9171991)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 7048171 - 7048029
Alignment:
Q  31 gcttttgcttctaactgtttatagcttctaattgtttatcacttctgctcatagcttttgattacagctcctacttgtttatagcttctgtttttgtgta 130  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7048171 gcttttgcttctaactgtttatggcttctaattgtttatcacttctgctcatagcttttgattacagctcctacttgtttatagcttctgtttttgtgta 7048072  T
Q  131 tagcttctaattgcttatggcttctgcttatagcttttgctta 173  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7048071 tagcttctaattgcttatggcttctgcttatagcttttgctta 7048029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 7048410 - 7048340
Alignment:
Q  141 ttgcttatggcttctgcttatagcttttgcttacagcttctgcttatggcttctaactgtttatagcttct 211  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7048410 ttgcttatcgcttcggcttatagcttttgcttacagcttctgcttatggcttctaactgtttataccttct 7048340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 7048395 - 7048196
Alignment:
Q  5 gcttatagcttttgcttacaacttctgcttttg-cttctaactgtttatagcttctaattgtttatca-----cttctgctcatagcttttgattacagc 98  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||| |||||||||| |||||      |||| ||| | ||||||||  |||| |    
T  7048395 gcttatagcttttgcttacagcttctgcttatggcttctaactgtttataccttctaattgcttatcgtatcgcttcagcttagagcttttgcatacaac 7048296  T
Q  99 tcctacttgtttatagcttctgtttttgtgtatagcttctaattgcttatggcttctgcttatagcttttgcttacagcttctgcttatggcttctaact 198  Q
    ||||||  ||||||||||| || ||      | |||||||||||| |||| ||||||| ||       ||||||||||||||| ||||||||||||||||    
T  7048295 tcctacacgtttatagcttatgctt------acagcttctaattgtttatcgcttctgttt-------ttgcttacagcttctacttatggcttctaact 7048209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 7042696 - 7042640
Alignment:
Q  109 ttatagcttctgtttttgtgtatagcttctaattgcttatggcttctgcttatagctt 166  Q
    ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  7042696 ttataacttctgtttttgtgtatagcttct-attgctcacggcttctgcttatagctt 7042640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 7042605 - 7042561
Alignment:
Q  73 ttctgctcatagcttttgattacagctcctacttgtttatagctt 117  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  7042605 ttctgctcatagcttttgcttacagctcctagttgtttatagctt 7042561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 7048062 - 7047986
Alignment:
Q  2 attgcttatagcttttgcttacaacttctgcttttg-cttctaactgtttatagcttctaattgtttatcacttctg 77  Q
    ||||||||| |||| |||||| | ||| ||||| || |||||||||||||||||||||||||| |||||| ||||||    
T  7048062 attgcttatggcttctgcttatagcttttgcttatgtcttctaactgtttatagcttctaattctttatcgcttctg 7047986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 7048242 - 7048165
Alignment:
Q  14 ttttgcttacaacttctgcttttg-cttctaactgtttatagcttctaattgtttatcacttctgctcatagcttttg 90  Q
    ||||||||||| ||||| ||| || |||||||||||||||||||||| |||| ||||  |||| ||| ||||||||||    
T  7048242 ttttgcttacagcttctacttatggcttctaactgtttatagcttctcattgcttatagcttcggcttatagcttttg 7048165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 7048205 - 7048162
Alignment:
Q  129 tatagcttctaattgcttatggcttctgcttatagcttttgctt 172  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||    
T  7048205 tatagcttctcattgcttatagcttcggcttatagcttttgctt 7048162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 2924144 - 2924230
Alignment:
Q  57 tctaattgtttatcacttctgctcatagcttttgattacagctcctacttgtttatagcttctgtttttgtgtatagcttctaattg 143  Q
    |||||||||||||  ||||| || |||| ||||| ||| |||  ||| ||||||||||||| | ||||||  |||||||||||||||    
T  2924144 tctaattgtttatagcttctacttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttctaattg 2924230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 9171991 - 9171939
Alignment:
Q  73 ttctgctcatagcttttgattacagctcctacttgtttatagcttctgttttt 125  Q
    ||||||| |||| ||||||||| |||| ||| ||||||||||||| |||||||    
T  9171991 ttctgcttataggttttgattatagcttctaattgtttatagcttttgttttt 9171939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University