View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_high_5 (Length: 499)
Name: NF9869_high_5
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_high_5 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 52134033 - 52133570
Alignment:
| Q |
19 |
attattccctagaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagt |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52134033 |
attattccttagaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagt |
52133934 |
T |
|
| Q |
119 |
gaccctcaaacttctcattgacactaaaaatcacaaagttctgttcgctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgcca |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
52133933 |
gaccctcaaacttctcattgacactaaaaatgacaaagttctgttcgctgaagcttccaaagctgtgatagattttctctttaacttgcttcgcttgcct |
52133834 |
T |
|
| Q |
219 |
gtcggtacagtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaac |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52133833 |
gtcggtacagtagttaaactactgaccaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaac |
52133734 |
T |
|
| Q |
319 |
aaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattgctggctttcttcccacaaatgatgctgatgcaaataacat |
418 |
Q |
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||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
52133733 |
aaaaccaaactaaggaggaactcttgaacccaatagctcctgtctcttctgctggaattgctggctttcttcccgcaaatgatgcagatgccaataacat |
52133634 |
T |
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| Q |
419 |
cgtaggagctgaaggaactttgtactatagatgctcaaaccaatgtgcttatgtcacatgtgat |
482 |
Q |
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| T |
52133633 |
cgtaggagatgaagtaactttgtactatagatgcttaaacaggtgtgcttatgtcacatgtgat |
52133570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 52154997 - 52154932
Alignment:
| Q |
228 |
gtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaa |
293 |
Q |
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||||||||||| ||| |||| |||| |||||||||||||||||| ||| | ||||| ||||||||| |
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| T |
52154997 |
gtagttaaactcctgggcaacaatgacatggttggtagcataggaaacatttatcaaagtgttgaa |
52154932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 294
Target Start/End: Complemental strand, 52145786 - 52145645
Alignment:
| Q |
153 |
aaagttctgttcgctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatg |
252 |
Q |
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| T |
52145786 |
aaagttctctttgctgaagcttcaaaatctgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatg |
52145687 |
T |
|
| Q |
253 |
gcatggttggtagcataggtaacctctatcatagtgttgaaa |
294 |
Q |
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| T |
52145686 |
gcatgattggtagtttaggaaatctgtatcagagtgttgaaa |
52145645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 9239 - 8865
Alignment:
| Q |
20 |
ttattccctagaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagtg |
119 |
Q |
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|||||||| |||||||||||||||| |||| |||||||| ||| ||||||||||| || ||| ||||||||||| |||||||| | |||||||||| |
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| T |
9239 |
ttattcccatgaatcggcctatataattcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccac---caacaaagtg |
9143 |
T |
|
| Q |
120 |
accctcaaacttctcattgacactaaaaatcacaaagttctgttcgctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccag |
219 |
Q |
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||||||||||||||||||||||| | ||| | ||||||||||| |||||||| || ||||||||||| |||||||| || || ||||||| ||||||| |
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| T |
9142 |
accctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
9043 |
T |
|
| Q |
220 |
tcggtacagtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaaca |
319 |
Q |
| |
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| ||||| || |||||||| | | ||| |||||||||||||||||||| ||||| |||||| | |||||||||||| |||| ||||||||||||||||| |
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| T |
9042 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaaca |
8943 |
T |
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| Q |
320 |
aaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattgctggctttcttcccacaaa |
397 |
Q |
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| | ||||||||||| | | ||||||| ||||||||| ||| ||| ||| |||||| ||| |||||||| |||| |
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| T |
8942 |
agaacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaa |
8865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 17020031 - 17020342
Alignment:
| Q |
20 |
ttattccctagaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagtg |
119 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||| ||| | ||||||||| || ||| ||||||||||| |||||||| | |||||||||| |
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| T |
17020031 |
ttattcccatgaatcggcctatataaatcaataatacagcttcttgatttgttatcattccaatatggcttcttctacttcttccac---caacaaagtg |
17020127 |
T |
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| Q |
120 |
accctcaaacttctcattgacactaaaaatcacaaagttctgttcgctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccag |
219 |
Q |
| |
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|||||||||||||| |||||||| | ||| | ||||||||||| |||||||| || ||||||||||| |||||||| || || ||||||| ||||||| |
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| T |
17020128 |
accctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
17020227 |
T |
|
| Q |
220 |
tcggtacagtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaaca |
319 |
Q |
| |
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| ||||| || |||||||| | | ||| |||||||||||||||||||| ||||| |||||| | |||||||||||| |||| ||| ||||||||||||| |
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| T |
17020228 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaaca |
17020327 |
T |
|
| Q |
320 |
aaaccaaactaaaga |
334 |
Q |
| |
|
| ||||||||||||| |
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| T |
17020328 |
agaccaaactaaaga |
17020342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 17550468 - 17550779
Alignment:
| Q |
20 |
ttattccctagaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagtg |
119 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||| ||| | ||||||||| || ||| ||||||||||| |||||||| | |||||||||| |
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| T |
17550468 |
ttattcccatgaatcggcctatataaatcaataatacagcttcttgttttgttatcattccaatatggcttcttctacttcttccac---caacaaagtg |
17550564 |
T |
|
| Q |
120 |
accctcaaacttctcattgacactaaaaatcacaaagttctgttcgctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccag |
219 |
Q |
| |
|
|||||||||||||| |||||||| | ||| | ||||||||||| |||||||| || ||||||||||| |||||||| || || ||||||| ||||||| |
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| T |
17550565 |
accctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
17550664 |
T |
|
| Q |
220 |
tcggtacagtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaaca |
319 |
Q |
| |
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| ||||| || |||||||| | | ||| |||||||||||||||||||| ||||| |||||| | |||||||||||| |||| ||| ||||||||||||| |
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| T |
17550665 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaaca |
17550764 |
T |
|
| Q |
320 |
aaaccaaactaaaga |
334 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
17550765 |
agaccaaactaaaga |
17550779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 294
Target Start/End: Original strand, 17522266 - 17522460
Alignment:
| Q |
100 |
cttcttctcccaacaaagtgaccctcaaacttctcattgacactaaaaatcacaaagttctgttcgctgaagcttccaaagctgtgattgattttctctt |
199 |
Q |
| |
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|||||||| ||| ||||||| || | || ||||| || ||||| || ||||| |||||||| || ||||||||||| ||||||||| |||| ||||| || |
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| T |
17522266 |
cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttctttt |
17522365 |
T |
|
| Q |
200 |
aaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaa |
294 |
Q |
| |
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|||||||| |||||||| |||| || || || || ||||| ||| ||||||||||||||||||| |||| || || ||| | |||||||||| |
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|
| T |
17522366 |
caacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggtagcttagggaatctgtatgagagtgttgaaa |
17522460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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