View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_1 (Length: 820)
Name: NF9869_low_1
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 294 - 589
Target Start/End: Complemental strand, 38029049 - 38028754
Alignment:
| Q |
294 |
tgtgcagttttttgcgttttgtgtttgattattggtgagaatgttgcggcgattattgagttcatgcctgtttgcattgtggtcgtttgatttggatttc |
393 |
Q |
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| T |
38029049 |
tgtgcagttttttgcgttttgtgtttgattattggtgagactgttgcggcgattgttgagttcatgcctgtttgcattgtggtcgtttgatttggatttc |
38028950 |
T |
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| Q |
394 |
attgctgaaacagtgtcgttgagggcaatgtgtttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaag |
493 |
Q |
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| T |
38028949 |
attgctgaaacagtgtcgttgagggcaatgtgtttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaag |
38028850 |
T |
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| Q |
494 |
acagtggtggtatgcggtggaatcttagtgattggctgcttgcgatggcatcgttttgagatcattggttccttagttgttttgtgtttccattaa |
589 |
Q |
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| T |
38028849 |
acggtggtggtatgcggtagaatcttagtgattggctgcttgcgatggcatcgttttgagatcaatgcttccttacttgttttgtgtttccattaa |
38028754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 642 - 814
Target Start/End: Complemental strand, 38028784 - 38028612
Alignment:
| Q |
642 |
tgctttcttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc |
741 |
Q |
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| T |
38028784 |
tgcttccttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc |
38028685 |
T |
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| Q |
742 |
agatattgaaactttttgttgtgctactcttagatagcatcaccatttttccctcaccttgatgtctctgctc |
814 |
Q |
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| T |
38028684 |
agatattgaaactttttgttgtgctactcttagatagcatcactatttttccctcaccttgatgcctctgctc |
38028612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 38029198 - 38029127
Alignment:
| Q |
146 |
gtaaaattctattagatcaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactctgg |
217 |
Q |
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| T |
38029198 |
gtaaatttctattagatcaactttgtctaaacgaatcaaccactataatcacttggctcttgaaaactctgg |
38029127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 31574877 - 31574789
Alignment:
| Q |
129 |
gtttctcttttcacttcgtaaaattctattagatcaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactctgg |
217 |
Q |
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| T |
31574877 |
gtttctcttttcacttcataaatttctataacaacaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactctgg |
31574789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 31574713 - 31574623
Alignment:
| Q |
290 |
gttctgtgcagttttttgcgttttgtgtttgattattggtgagaatgttgcggcgattattgagttcatgcctgtttgcattgtggtcgtt |
380 |
Q |
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| T |
31574713 |
gttctgtgcagttttttgtgtttagtgtttgattattggggagattgttggggcgagtgttgagttcatgcctgtttgcattgtggtcgtt |
31574623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 445 - 496
Target Start/End: Complemental strand, 31574617 - 31574566
Alignment:
| Q |
445 |
caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca |
496 |
Q |
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| T |
31574617 |
caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca |
31574566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 31574564 - 31574520
Alignment:
| Q |
513 |
gaatcttagtgattggctgcttgcgatggcatcgttttgagatca |
557 |
Q |
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| T |
31574564 |
gaatcttagtgattggctgcttgctatggcatcaatttgagatca |
31574520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 6509679 - 6509593
Alignment:
| Q |
129 |
gtttctcttttcacttcgtaaaattctattagatcaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactct |
215 |
Q |
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| T |
6509679 |
gtttctcttttcacttcataaatttctataacaacaactttgtctaaacgaatcaaccactataatcacttggctcttgaaaactct |
6509593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 6509512 - 6509418
Alignment:
| Q |
290 |
gttctgtgcagttttttgcgtttt----gtgtttgattattggtgagaatgttgcggcgattattgagttcatgcctgtttgcattgtggtcgtt |
380 |
Q |
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| T |
6509512 |
gttctgtgcagttttttgtgtttatttagtgtttgattattggtgagattgttggagcgactgttgagttcatgcctgtttgcattgtggtcgtt |
6509418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 641
Target Start/End: Original strand, 15150837 - 15150883
Alignment:
| Q |
595 |
tagttttcactttccgttatttgttattgcttaattttaatcttaat |
641 |
Q |
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| T |
15150837 |
tagttttcactttctgttatttgttattgcaatattttaatcttaat |
15150883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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