View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9869_low_10 (Length: 492)

Name: NF9869_low_10
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9869_low_10
NF9869_low_10
[»] chr2 (26 HSPs)
chr2 (1-289)||(9079786-9080074)
chr2 (3-91)||(10474184-10474274)
chr2 (19-140)||(10518563-10518679)
chr2 (1-89)||(10848813-10848897)
chr2 (405-483)||(28102274-28102352)
chr2 (405-483)||(27968467-27968545)
chr2 (405-483)||(28092042-28092120)
chr2 (19-91)||(10463625-10463695)
chr2 (23-91)||(7478686-7478750)
chr2 (405-478)||(10493383-10493456)
chr2 (19-91)||(10545188-10545258)
chr2 (405-478)||(10849935-10850008)
chr2 (19-140)||(10507389-10507505)
chr2 (1-87)||(28105303-28105386)
chr2 (420-478)||(10518841-10518899)
chr2 (2-87)||(27967338-27967420)
chr2 (405-478)||(10507942-10508015)
chr2 (405-478)||(10545597-10545670)
chr2 (1-58)||(10860717-10860774)
chr2 (19-91)||(7476521-7476589)
chr2 (408-478)||(10463885-10463955)
chr2 (405-478)||(10475078-10475151)
chr2 (39-91)||(10507523-10507573)
chr2 (430-478)||(7478124-7478172)
chr2 (51-91)||(10488770-10488810)
chr2 (442-478)||(10489347-10489383)
[»] chr5 (2 HSPs)
chr5 (3-140)||(33602579-33602711)
chr5 (26-91)||(33575337-33575399)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 9080074 - 9079786
Alignment:
Q  1 actggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9080074 actggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggag 9079975  T
Q  101 agggggtgggtgagggagaagtaacaactagttttcatatcagaaaatgcatctgccttcataggtgcatggacaaaaaatggatttcctcaaggatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079974 agggggtgggtgagggagaagtaacaactagttttcatatcagaaaatgcatctgccttcataggtgcatggacaaaaaatggatttcctcaaggatcaa 9079875  T
Q  201 accctaaaatgtaaaacaagaataaaacatatttgaatttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079874 accctaaaatgtaaaacaagaataaaacatatttgaatttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 9079786  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 10474184 - 10474274
Alignment:
Q  3 tggtataaacttctccgctatggtggccctacgaactgcttcct--acacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    |||||||||||||   ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  10474184 tggtataaacttccgtgctatggtggccctacgaactgcttcctacacacacacacaataataacaaaaagaaaactgtttacaagataag 10474274  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 10518563 - 10518679
Alignment:
Q  19 gctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggag 118  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||  ||||||||||||| | |||| | | |||  ||||| ||| |    
T  10518563 gctatggtggcccgacgaactgcttcctacacacac--aataataacaaaaagaaaataatttacaaaataa-gatttgaaaatggg--gggtgggggcg 10518657  T
Q  119 aagtaacaactagttttcatat 140  Q
    ||||||||||| ||||||||||    
T  10518658 aagtaacaactggttttcatat 10518679  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10848813 - 10848897
Alignment:
Q  1 actggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaata 89  Q
    ||||||||||| || |  ||||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||| |||||||    
T  10848813 actggtataaatttgtgtgctatggtggccctacgaactgcttcctacacac----aataataacaaaaagaaaattattttcaaaata 10848897  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 28102352 - 28102274
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 483  Q
    ||||||||||| || ||||||||| || ||| | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  28102352 ctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 483
Target Start/End: Original strand, 27968467 - 27968545
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 483  Q
    ||||||||||| || ||||||||| || ||  | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  27968467 ctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 28092120 - 28092042
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 483  Q
    ||||||||||| || ||||||||| || ||  | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  28092120 ctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 10463625 - 10463695
Alignment:
Q  19 gctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    ||||| ||||| ||||||| ||||||||||| ||||||  ||||||||||||||||| |||||||||||||||    
T  10463625 gctatcgtggctctacgaattgcttcctacaaacacaa--taataacaaaaagaaaattatttacaaaataag 10463695  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 7478750 - 7478686
Alignment:
Q  23 tggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    |||| |||||| |||||||||||||||||||    ||||||||||||||||||||| ||||||||||||    
T  7478750 tggttgccctaagaactgcttcctacacaca----ataataacaaaaagaaaactagttacaaaataag 7478686  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 10493383 - 10493456
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||||| || ||| ||||| |||||| | | |||||||||||||||||||||||||||||  |||||||    
T  10493383 ctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 10545188 - 10545258
Alignment:
Q  19 gctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    |||||||||||||  ||||| |||||||||| ||||||  |||||||||||| |||||||||||||| |||||    
T  10545188 gctatggtggcccggcgaacagcttcctacaaacacaa--taataacaaaaataaaactatttacaagataag 10545258  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 10849935 - 10850008
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||||| || ||||||||| ||||||   | |||||||||||||||||||||||||||||  |||||||    
T  10849935 ctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 10507389 - 10507505
Alignment:
Q  19 gctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggag 118  Q
    |||||||||| || ||||||||||||||||||||||  ||||||||||| |||||||  | ||||||| ||| | |||| | | |||  ||||| |||||    
T  10507389 gctatggtggtccgacgaactgcttcctacacacac--aataataacaacaagaaaataacttacaaattaa-gatttgaaaatggg--gggtgggggag 10507483  T
Q  119 aagtaacaactagttttcatat 140  Q
    ||||||||||| ||||| ||||    
T  10507484 aagtaacaactggtttttatat 10507505  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 28105386 - 28105303
Alignment:
Q  1 actggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaa 87  Q
    |||||||||||||||   ||||||||||||||||||||||| | ||  ||||||||||||||| ||| || ||||||||||| ||||    
T  28105386 actggtataaacttccgtgctatggtggccctacgaactgcgttct--acacacaaaataatagcaataa-aaaactatttaaaaaa 28105303  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 10518841 - 10518899
Alignment:
Q  420 tgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||| ||| |||| ||||||||||||||||||||| |||||||||  |||||||    
T  10518841 tgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 27967338 - 27967420
Alignment:
Q  2 ctggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaa 87  Q
    ||||||||||||| |  ||||||||||||||||||||||| | ||  ||||||||||||||| ||| || ||||||||||| ||||    
T  27967338 ctggtataaacttgtgtgctatggtggccctacgaactgcgttct--acacacaaaataatagcaataa-aaaactatttaaaaaa 27967420  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 10507942 - 10508015
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||||| || ||||||||| ||||||  ||  ||||||||||||||||||||||| ||||  |||||||    
T  10507942 ctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 10545597 - 10545670
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||||| || ||| ||||| |||||  | |||||||||||||||||||||||||| |||| ||| ||||    
T  10545597 ctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10860717 - 10860774
Alignment:
Q  1 actggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaa 58  Q
    ||||||||||| |||   ||||||||| ||||||||||||||||||||||| ||||||    
T  10860717 actggtataaatttccgtgctatggtgaccctacgaactgcttcctacacagacaaaa 10860774  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 7476589 - 7476521
Alignment:
Q  19 gctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    ||||| || |||||| ||| |||||||||||||||    ||||||||||||||||||||| | ||||||||||    
T  7476589 gctatagttgccctatgaattgcttcctacacaca----ataataacaaaaagaaaactagtgacaaaataag 7476521  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 10463885 - 10463955
Alignment:
Q  408 aagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    |||||||| || ||||||||| ||| || | |||||||| |||||||||||||| ||||| | ||||||||    
T  10463885 aagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 10475078 - 10475151
Alignment:
Q  405 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||||| || ||| ||||| ||||||  ||  |||||||| |||||||||||||||||||  |||||||    
T  10475078 ctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 10507523 - 10507573
Alignment:
Q  39 tgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    ||||||||||||| ||||  |||||||||||||||| |||| |||||||||||    
T  10507523 tgcttcctacacatacaa--taataacaaaaagaaacctatatacaaaataag 10507573  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 7478172 - 7478124
Alignment:
Q  430 ttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    |||||| | |||||||||||||||||||||| ||||||||  |||||||    
T  7478172 ttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 10488770 - 10488810
Alignment:
Q  51 acacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    ||||| |||||||||| ||||||||||| ||||||||||||    
T  10488770 acacacaataataacagaaagaaaactagttacaaaataag 10488810  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 10489347 - 10489383
Alignment:
Q  442 aaagcttcagcaagtttatcgtccacctttgacacag 478  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10489347 aaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 33602579 - 33602711
Alignment:
Q  3 tggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagag 102  Q
    |||||||||||||   |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||| |||| | |||| |||     
T  33602579 tggtataaacttccgtgctatggtggccctacaaactgcttcctacacacac--aataataacaaaaagaaaactatttacaagataa-gatttgtaga- 33602674  T
Q  103 ggggtgggtgagggagaagtaacaactagttttcatat 140  Q
      || ||||| ||| |||||||||||| ||||||||||    
T  33602675 -tggcgggtgggggcgaagtaacaactggttttcatat 33602711  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 33575399 - 33575337
Alignment:
Q  26 tggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 91  Q
    |||||||| ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||    
T  33575399 tggccctatgaactgcttcctacacacac--aataataac-aaaagaaaactatttacaagataag 33575337  T

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