View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_13 (Length: 448)
Name: NF9869_low_13
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 224 - 432
Target Start/End: Complemental strand, 3033775 - 3033567
Alignment:
| Q |
224 |
gattcattgtttaaggttaagttgaaattgagacagtttaatgtaattgatgtcgcgaaaacatggttttggagatttgtagaatgaaatcttaggttga |
323 |
Q |
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| T |
3033775 |
gattcattgtttaaggttaagttgaaattgagacagtttaatgtaattgatgtcgcgaaaacatggttttggagatttgtagaatgaaatcttaggttga |
3033676 |
T |
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| Q |
324 |
ggattgttatttaagattctgtatgnnnnnnnatgatgtttggttgttcttttgtttaaggtttagttgaatttgttgaaatggagacagatttaatgtt |
423 |
Q |
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| T |
3033675 |
ggattgttatttaagattctgtatgtttttttatgatgtttggttgttcttttgtttaaggtttagttgaatttgttgaaatggagacagatttaatgtt |
3033576 |
T |
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| Q |
424 |
attgatgtc |
432 |
Q |
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||||||||| |
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| T |
3033575 |
attgatgtc |
3033567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 3033983 - 3033939
Alignment:
| Q |
16 |
tggttgtggtgattagtagaatgaaatcttagaatgaggattgag |
60 |
Q |
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| T |
3033983 |
tggttgtggtgattagtagaatgaaatcttagaatgaggattgag |
3033939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3034132 - 3034074
Alignment:
| Q |
1 |
taatgttattgatgttggttgtggtgattagtagaatgaaatcttagaatgaggattga |
59 |
Q |
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| T |
3034132 |
taatgttattgatgttggttgtggagattagtagaatgatatcttaggttgaggattga |
3034074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 3034173 - 3034118
Alignment:
| Q |
376 |
tgtttaaggtttagttgaatttgttgaaatggagacagatttaatgttattgatgt |
431 |
Q |
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| T |
3034173 |
tgtttaagttttagtttaatttgttgaaatttagacagatttaatgttattgatgt |
3034118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 3033874 - 3033838
Alignment:
| Q |
125 |
gtgattagtagagtgaagtcttaggatgaggattgaa |
161 |
Q |
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| T |
3033874 |
gtgattagtagagtgaagtcttaggatgaggattgaa |
3033838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 3034117 - 3034056
Alignment:
| Q |
287 |
tggttttggagatttgtagaatgaaatcttaggttgaggattgttatttaagattctgtatg |
348 |
Q |
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| T |
3034117 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatattttgtatg |
3034056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 3033601 - 3033496
Alignment:
| Q |
244 |
gttgaaattgagacag-tttaatgtaattgatgtcgcgaaaacatggttttggagatttgtagaatgaaatcttaggttgaggattgttatttaagattc |
342 |
Q |
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| T |
3033601 |
gttgaaatggagacagatttaatgttattgatgtcgcgaaaatgtggctgtggtgattagtaagaagaaatcttatattgaggattgaaattaaagattt |
3033502 |
T |
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| Q |
343 |
tgtatg |
348 |
Q |
| |
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|||||| |
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| T |
3033501 |
tgtatg |
3033496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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