View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_14 (Length: 443)
Name: NF9869_low_14
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 157 - 428
Target Start/End: Complemental strand, 3393691 - 3393420
Alignment:
| Q |
157 |
tatgcatattaatagaatcacatgaacatccttaattatgataagaaagaattatgaaagaaattattaactattattggggtattgcagataattttta |
256 |
Q |
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| T |
3393691 |
tatgcataataataaaatgacatgtacatccttaattatgataagaaagaattatgaaagaaattattaactattgttggggtattgcagataattttta |
3393592 |
T |
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| Q |
257 |
ggtgtgtaagagcaatcttcatagtttgttggtaatgacctcggccttccttctaaagtacattgtttcaacccatatattcaccatggatgagaaaaag |
356 |
Q |
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| T |
3393591 |
ggtgtgtaagagcaatcttcatagtttgttggtaatgacctcggccttccttctaaagtacattgtttcaacccatatattcaccatggatgagaaaaag |
3393492 |
T |
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| Q |
357 |
agcaaggtaaatagagtttatcaaacgaaaattagtgctaaacatcatcaagattaatcacaccacacaatt |
428 |
Q |
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| T |
3393491 |
agcgaggtaaatagagtttatcaaacgaaaattagtgctaaacatcatcaagattaatcacaccacacaatt |
3393420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 162 - 419
Target Start/End: Complemental strand, 3300818 - 3300561
Alignment:
| Q |
162 |
atattaatagaatcacatgaacatccttaattatgataagaaagaattatgaaagaaattattaactattattggggtattgcagataatttttaggtgt |
261 |
Q |
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| T |
3300818 |
atattaataaaatgacatgaacatccttaattatgataagaaagaattatgaaagaaattattaactattgttggggtattgcagataatttgtaggtgt |
3300719 |
T |
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| Q |
262 |
gtaagagcaatcttcatagtttgttggtaatgacctcggccttccttctaaagtacattgtttcaacccatatattcaccatggatgagaaaaagagcaa |
361 |
Q |
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| T |
3300718 |
gtaacagcaatcttcatagtttgttggtaatgacctcggccttccttctaaagtacattgtttcaacccatatattcaccatggatgagaaaaagagcga |
3300619 |
T |
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| Q |
362 |
ggtaaatagagtttatcaaacgaaaattagtgctaaacatcatcaagattaatcacac |
419 |
Q |
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| T |
3300618 |
ggtaaatagagtttatcaaacgaaaattagtgctaaacatcatcaagattaatcacac |
3300561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 3300970 - 3300911
Alignment:
| Q |
11 |
cataggaaacatttacatctattaatgtttatttgtactatatctcagaacgaccatttat |
71 |
Q |
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| T |
3300970 |
cataggaaacatttacatctattaatgtttgtttgtactatatctc-gaacgaccatttat |
3300911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 3393837 - 3393778
Alignment:
| Q |
11 |
cataggaaacatttacatctattaatgtttatttgtactatatctcagaacgaccatttat |
71 |
Q |
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| T |
3393837 |
cataggaaacatttacatctattaatgtttgtttgtactatatctc-gaacgaccatttat |
3393778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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