View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9869_low_16 (Length: 414)

Name: NF9869_low_16
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9869_low_16
NF9869_low_16
[»] chr2 (11 HSPs)
chr2 (3-398)||(30385006-30385401)
chr2 (4-275)||(30395759-30396030)
chr2 (3-275)||(23768626-23768898)
chr2 (17-275)||(30484723-30484981)
chr2 (3-275)||(23783184-23783456)
chr2 (17-273)||(30476545-30476801)
chr2 (3-207)||(8378896-8379100)
chr2 (3-267)||(30425291-30425555)
chr2 (17-267)||(30431338-30431588)
chr2 (17-203)||(30437593-30437779)
chr2 (17-267)||(30469404-30469654)
[»] chr5 (1 HSPs)
chr5 (3-274)||(41626678-41626949)
[»] chr8 (4 HSPs)
chr8 (18-185)||(15844329-15844496)
chr8 (18-185)||(15865532-15865699)
chr8 (18-123)||(15858526-15858631)
chr8 (320-382)||(2033270-2033333)
[»] chr4 (1 HSPs)
chr4 (19-123)||(11019459-11019563)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 30385006 - 30385401
Alignment:
Q  3 tgatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcga 102  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30385006 tgatgatgctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcga 30385105  T
Q  103 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30385106 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 30385205  T
Q  203 ctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaaccattattatagtacactctcaagttg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  30385206 ctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaaccattattatagtacgctctcaaggtg 30385305  T
Q  303 tgtattttattgtatactattttactatatatttttagaataacatttgtattatgaaggtttgctcatactaatgaaaccctagcggctttgatg 398  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30385306 tgtattttattgtatactattttactatatattatttgaataacatttgtattatgaaggtttgctcatactaatgaaaccctagcggctttgatg 30385401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 30395759 - 30396030
Alignment:
Q  4 gatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaa 103  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||  |||    
T  30395759 gatgatgctaaaatgttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggggtccaagaa 30395858  T
Q  104 tttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgc 203  Q
    |||||||||||||||||||||| |||||||||||||| |||||| || || |||||||||||||||| ||||||||||||||  | ||||||||||||||    
T  30395859 tttgcattggacaaaacttttccctaatggaagcaaagatggcattgtcaatgattttgcaacatttttcatttgaactttcctcaacctatgctcatgc 30395958  T
Q  204 tccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaa 275  Q
    ||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30395959 tccatcaactgtgattactcttcagccacaatatggtgctcatattattatacgcaaagtggaaacataaaa 30396030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 23768626 - 23768898
Alignment:
Q  3 tgatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcga 102  Q
    |||||||| ||| || ||||||||||| ||||||||||| |||||||||||||||||||| || ||| |||||| |||||| ||||||   |||||| ||    
T  23768626 tgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttggagcaggtcctaga 23768725  T
Q  103 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 202  Q
    || ||||||||||| | |||||||||| |||||||||| ||||||||| |||||||||| ||  |||| |||||||||||||| |  || ||||||||||    
T  23768726 atctgcattggacagaccttttctctattggaagcaaagatggcaatggcattgattttacagaatttttcatttgaactttctcaaacatatgctcatg 23768825  T
Q  203 ctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaa 275  Q
    |||||||   | || ||||| ||||||||||| |||| |||||| ||||| |||||||| |  ||||||||||    
T  23768826 ctccatctgtggtgcttactgttcagccacaacatggtgctcatgttattctacgcaaaatcaaaacataaaa 23768898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 30484723 - 30484981
Alignment:
Q  17 tgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggaca 116  Q
    ||||||||||||| |||||| | | |||| |||| |||||||||||||| |||  ||||| ||||||||||||| |||||||| ||||||| ||||||||    
T  30484723 tgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaatttgtattggaca 30484822  T
Q  117 aaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatg 216  Q
    |||||||||  |  |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | ||  |     
T  30484823 aaacttttccatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgctcatgctccagcttcagta 30484922  T
Q  217 attactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaa 275  Q
    ||||| ||| |||||||  |||| |||||||| ||| | || ||| |||||| ||||||    
T  30484923 attacccttgagccacagcatggtgctcatatcattttgcgtaaagtggaaatataaaa 30484981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 23783456 - 23783184
Alignment:
Q  3 tgatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcga 102  Q
    |||||||| ||| || ||||||||||| ||||||||||| |||||||||||||||||||| || ||| |||||| |||||| ||||||  ||||||| ||    
T  23783456 tgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttggagcgggtcctaga 23783357  T
Q  103 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 202  Q
    || |||||||||||||||||||| ||  |||||||||| ||||||||| ||||||||||  |  |||| |||||||||||||| |  || ||||||||||    
T  23783356 atctgcattggacaaaacttttccctgttggaagcaaagatggcaatggcattgattttaaagaatttttcatttgaactttctcaaacatatgctcatg 23783257  T
Q  203 ctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaaa 275  Q
    |||||||   | || || || ||||||||||| |||| |||||| ||||| |||||||| |  ||||||||||    
T  23783256 ctccatctgtggtgctttctgttcagccacaacatggtgctcatgttattctacgcaaaatcaaaacataaaa 23783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 30476545 - 30476801
Alignment:
Q  17 tgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggaca 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |||||||  ||||||||||||||||    
T  30476545 tgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggagggggtccaagaatttgcattggaca 30476644  T
Q  117 aaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatg 216  Q
    ||| |||||  |  |||||||||| ||||||||| || |||||||  || | ||||||||||||||||| ||  | ||||||||||||||| ||    ||    
T  30476645 aaatttttccatgttggaagcaaagatggcaatggcaatgattttaaaaaaattctcatttgaactttctccatcttatgctcatgctccaacccaagtg 30476744  T
Q  217 attactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataa 273  Q
    ||||| ||||||||  ||||||| | |||| ||||| |||| ||| ||| |||||||    
T  30476745 attacccttcagcctaaatatggtgttcatcttattctacgtaaagtggcaacataa 30476801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 8379100 - 8378896
Alignment:
Q  3 tgatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcga 102  Q
    ||||||||  || |||||||||||||| |||||| ||| |||||||||||||||||||||||| ||| ||  || ||||||||||||| |||||||| ||    
T  8379100 tgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattttccatttggagggggtcctaga 8379001  T
Q  103 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 202  Q
     ||||||| |||||||||||||| ||| |||||||||| |||||| || || ||||||| ||| ||||||  ||||||||||| || ||||||||||||     
T  8379000 gtttgcatgggacaaaacttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaacctatgctcata 8378901  T
Q  203 ctcca 207  Q
    |||||    
T  8378900 ctcca 8378896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 30425291 - 30425555
Alignment:
Q  3 tgatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcga 102  Q
    |||||||| |||  |||||||||| || |||||||| | |||  |||  ||||||||||||||||||  ||||| ||||||||||||| |||||||| ||    
T  30425291 tgatgatgctaaggtgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcattttttccatttggagggggtcctaga 30425390  T
Q  103 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 202  Q
    |||||||||||||||||||||||| |  |||||||||| ||||||||  || ||||||| |||| ||||   || |||||||| || |  ||||||||||    
T  30425391 atttgcattggacaaaacttttctatgttggaagcaaagatggcaatagcaatgattttacaacgtttcgacttcgaactttctccaagttatgctcatg 30425490  T
Q  203 ctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaa 267  Q
    | ||  || |  | ||||| ||||||||||||||||| |||||||| ||| |||| ||| |||||    
T  30425491 ccccggccacagtaattacgcttcagccacaatatggtgctcatataattctacgtaaagtggaa 30425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 30431338 - 30431588
Alignment:
Q  17 tgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggaca 116  Q
    |||||||||| || |||||||| | |||  |||  ||||||||||||||||||  ||||| | ||||||||| | |||||||| ||||||| ||||||||    
T  30431338 tgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaagggggtcctagaatttgaattggaca 30431437  T
Q  117 aaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatg 216  Q
    |||||||||  |  |||||||||| ||||||||  || ||||||| |||| |||||||||||||||||| ||  | ||||||||||| ||  |  || |     
T  30431438 aaacttttccatgttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccatcttatgctcatgccccggctacggta 30431537  T
Q  217 attactcttcagccacaatatggcgctcatattattatacgcaaactggaa 267  Q
    ||||| ||||||||||||||||| |||||||| ||| |||| ||| |||||    
T  30431538 attacgcttcagccacaatatggtgctcatataattctacgtaaagtggaa 30431588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 30437593 - 30437779
Alignment:
Q  17 tgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggaca 116  Q
    ||||||||||||| |||||||||| |||  |||  ||||||||||||||||||  ||||| | ||||||||||| |||||||| ||||||||||||||||    
T  30437593 tgttcaatcctgagagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggagggggtcctagaatttgcattggaca 30437692  T
Q  117 aaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgc 203  Q
     ||||||||| |  |||||||||| ||||| ||  || ||||||| |||| ||||||||| |||||||| ||  | |||||||||||    
T  30437693 gaacttttctatgttggaagcaaagatggcgatagcaatgattttacaacgtttctcattcgaactttctccatcttatgctcatgc 30437779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 30469404 - 30469654
Alignment:
Q  17 tgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggaca 116  Q
    |||||||||| || |||||||||| |||  |||  |||||||| |||||||||  ||||| ||||||||||| | |||||||| ||||||||||||||||    
T  30469404 tgttcaatcccgagagattttctgaaggtgttttaaaagcaaccaatggaagaaattcattttttccatttgcagggggtcctagaatttgcattggaca 30469503  T
Q  117 aaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatg 216  Q
     ||||||||  |  |||||||||| ||||||||  || ||||||| |||| |||||||||||||||||| || |  ||||| ||||| ||  |  || |     
T  30469504 gaacttttccatgttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccaagttatgcccatgccccggctacggta 30469603  T
Q  217 attactcttcagccacaatatggcgctcatattattatacgcaaactggaa 267  Q
    ||||| ||||||||||| ||||| |||||||| ||| |||  |||||||||    
T  30469604 attacgcttcagccacagtatggtgctcatataattctacataaactggaa 30469654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 41626949 - 41626678
Alignment:
Q  3 tgatgatgttaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcga 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||||||||||||||||| |     
T  41626949 tgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctagg 41626850  T
Q  103 atttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatg 202  Q
    || |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||| ||||||| ||  ||||||||||||    
T  41626849 atctgcattgggcaaaacttttctctattggaagcaaagatggcaatgacattgattttacagcatttctcatttcaactttctccagcctatgctcatg 41626750  T
Q  203 ctccatcctcgatgattactcttcagccacaatatggcgctcatattattatacgcaaactggaaacataaa 274  Q
    ||||| || |  | ||| ||||| |||||||||| || |||||||||||| | || ||||||||||||||||    
T  41626749 ctccagccacagtaattgctcttaagccacaatacggtgctcatattattcttcgtaaactggaaacataaa 41626678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 15844496 - 15844329
Alignment:
Q  18 gttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggacaa 117  Q
    |||||| || ||||| ||| ||| ||||||| | || |||||||| |||  |||||| | ||| || ||||||||||||||| |||||||  ||||||||    
T  15844496 gttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccctttggatggggtcctagaatttgtcttggacaa 15844397  T
Q  118 aacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttc 185  Q
    |||||| |  || | |||||||| || |||||  ||||| |  ||||  |||||||||||||||||||    
T  15844396 aactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctcatttgaactttc 15844329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 15865699 - 15865532
Alignment:
Q  18 gttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggacaa 117  Q
    |||||| |||||||| ||| ||| ||||||| | || || ||||| |||| |||||| | ||| || ||||||||||||||| |||||||  ||||||||    
T  15865699 gttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttggatggggtcctagaatttgtcttggacaa 15865600  T
Q  118 aacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttc 185  Q
    |||||| |  || | |||||||| || |||||  ||||| |  ||||  |||||||||| ||||||||    
T  15865599 aactttgccttactagaagcaaagatagcaatttcattgctgctgcagaatttctcattcgaactttc 15865532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 15858631 - 15858526
Alignment:
Q  18 gttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggacaa 117  Q
    |||||| |||||||| ||| ||| ||||||| | || |||||||| |||  |||||| | ||| || ||||||||||||||| |||||||  ||||||||    
T  15858631 gttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggggtcctagaatttgtcttggacaa 15858532  T
Q  118 aacttt 123  Q
    ||||||    
T  15858531 aacttt 15858526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 2033270 - 2033333
Alignment:
Q  320 tattttactatatatttttagaataacatttgtattatgaag-gtttgctcatactaatgaaac 382  Q
    ||||| |||||||||||| ||| ||||||||||||| |||||  ||||||||| ||||||||||    
T  2033270 tatttcactatatattttgagagtaacatttgtattttgaagattttgctcattctaatgaaac 2033333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 11019459 - 11019563
Alignment:
Q  19 ttcaatcctgaaagattttctggaggaatttccaaagcaacaaatggaagagtttcatcttttccatttggatggggtcctcgaatttgcattggacaaa 118  Q
    ||||| || |||||||| |||| |||| |||| || ||||||||||| | |||||| |  || || ||||||||||||||  || |||| ||||||||||    
T  11019459 ttcaaaccagaaagattctctgaaggagtttcaaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaa 11019558  T
Q  119 acttt 123  Q
    |||||    
T  11019559 acttt 11019563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University