View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_17 (Length: 410)
Name: NF9869_low_17
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 38982921 - 38983311
Alignment:
| Q |
1 |
taagtgtaacctccatggcagagtcgctctacacaagggggatcctccattgacaacattttcgttgaaacataagctttacggattgtggcttgatctg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| ||||||| ||||||||||| |||| || |
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| T |
38982921 |
taagtgtaacctccatggcagagtcgctctgcacaagggggatcctccattgacaacactttcatagaaacagaagctttccggattgtggcctgatatg |
38983020 |
T |
|
| Q |
101 |
cacaattggaatcttacacctcttgataagggttttttcgagtttaacttcagttcaattgaagatatgca--gagtttgggcattaagggtggtgaata |
198 |
Q |
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| T |
38983021 |
cacaattggaatcttacacctcttggtaagggttttttcgactttaacttcagttcaattgaagacatgcacagagtttgggcattgagggtggtgaata |
38983120 |
T |
|
| Q |
199 |
tgaaacctgggttccttcgtttctactgttggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcactt |
298 |
Q |
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| T |
38983121 |
tgaaacctgggttccttcgtttctactgctggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcactt |
38983220 |
T |
|
| Q |
299 |
accccaagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcagagcaga |
389 |
Q |
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| T |
38983221 |
accccaagaatattagaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcatagcaga |
38983311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 38834885 - 38834936
Alignment:
| Q |
261 |
caaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatatt |
312 |
Q |
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| T |
38834885 |
caaactcatgcgcaaatttgggtccggctgatgcacctaccccaggaatatt |
38834936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 373
Target Start/End: Original strand, 51523394 - 51523559
Alignment:
| Q |
208 |
ggttccttcgtttctactgttggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaaga |
307 |
Q |
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|||| |||||||||| ||||||||| | | ||||||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||| ||||| ||||| |
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| T |
51523394 |
ggtttcttcgtttctcctgttggactaggggtttcaagcctcaagctcaagtgcaaactcatgcccaaatttgggttaggctcatgcatttacctcaaga |
51523493 |
T |
|
| Q |
308 |
atattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
373 |
Q |
| |
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| T |
51523494 |
atattggagaaaaacaactttgtttgagatttcctctggattgtgtacccctctttccattgatga |
51523559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 343
Target Start/End: Original strand, 44771695 - 44771954
Alignment:
| Q |
86 |
ttgtggcttgatctgcacaattggaatcttacacctcttgataagggttttttcgagtttaacttcagttcaattgaagatatgc--agagtttgggcat |
183 |
Q |
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||||||| | || |||| |||||||| || || || |||| |||||||| |||||||| || |||||||| ||||| ||||||| | | ||||||| | |
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| T |
44771695 |
ttgtggcctaatttgcaaaattggaacctcactccgcttggaaagggtttcttcgagttcaatttcagttccattgatgatatgcgcacaatttgggcgt |
44771794 |
T |
|
| Q |
184 |
taagggtggtgaatatgaaacctgggttccttcgtttctactgttggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggt |
283 |
Q |
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| T |
44771795 |
taggggtgatcaatctcaagcctgggtttcttcgcttctattgttggaccagagacttcaaacctcaagctctggtgcaaacacatgcacaaatttgggt |
44771894 |
T |
|
| Q |
284 |
caggttgatgcacttaccccaagaatattcgaggaagacaaccctgtttgagattgcttc |
343 |
Q |
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| T |
44771895 |
gtgtcttatgcatttaccccaagaatactggaggaggaaaactctctatgagattgcttc |
44771954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 24979252 - 24979166
Alignment:
| Q |
193 |
tgaatatgaaacctgggttccttcgtttctactgttggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaattt |
279 |
Q |
| |
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||||||||||||||||||| || | ||||||||||||||| | |||||||||||| ||||||| ||||||| |||||||| |||| |
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| T |
24979252 |
tgaatatgaaacctgggtttctacatttctactgttggactagagatttcaagccccaagctcttgtgcaaacacatgctcagattt |
24979166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 22754029 - 22753969
Alignment:
| Q |
261 |
caaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaaga |
321 |
Q |
| |
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||||||||||| |||||||||||| | |||||||| ||||| || ||||||| ||| |||| |
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| T |
22754029 |
caaactcatgcgcaaatttgggtccgattgatgcatttacctcaggaatattggagaaaga |
22753969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 28103096 - 28102963
Alignment:
| Q |
240 |
ttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaagacaaccctgtttgagattg |
339 |
Q |
| |
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||||| || ||||||||| ||| ||| |||||||| |||||||| || | ||||| || || |||||||||| |||||||| |||||| |||||||||| |
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| T |
28103096 |
ttcaaaccccaagctcaagtgcgaacccatgctcagatttgggttagacttatgcattttcctcaagaatattggaggaagagaaccctttttgagattg |
28102997 |
T |
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| Q |
340 |
cttcaggcttaggtacccctcttgcaattgatga |
373 |
Q |
| |
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||| || ||||| || |||||||| |||||||| |
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| T |
28102996 |
cttatggtttaggcactcctcttgctattgatga |
28102963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 373
Target Start/End: Original strand, 36904854 - 36905038
Alignment:
| Q |
189 |
gtggtgaatatgaaacctgggttccttcgtttctactgttggacaaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggt |
288 |
Q |
| |
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||||| ||| ||||||| ||| |||||||||||| |||||| ||| | ||||| || |||||||| ||||||| |||||||| |||||||| | |
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| T |
36904854 |
gtggtcaatctgaaaccagggatccttcgtttctcttgttggtcaaggggcttcaaaccccaagctcaggtgcaaacccatgctcagatttgggttatac |
36904953 |
T |
|
| Q |
289 |
tgatgcacttaccccaagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
373 |
Q |
| |
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| T |
36904954 |
ttatgcatttgcctcaagaatattggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatga |
36905038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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