View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_18 (Length: 409)
Name: NF9869_low_18
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 35501573 - 35501192
Alignment:
| Q |
8 |
ttggtgttcagatcaaagatgggttgttctacaaattcactggatttcgtgatcaggttactttctgcccctcctgaatgtccaattacatatatttgta |
107 |
Q |
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| T |
35501573 |
ttggtgttcagatcaaagatgggttgttctacaaattcactggatttcgtgatcaggttactttctgcccctcctgaatgtccaattacatatatttgta |
35501474 |
T |
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| Q |
108 |
gactaaggaattcaaatatctggtttgttttcttatgtttgttcctttgattaacattttgacagatatagatattaatgactgggacttagattggcat |
207 |
Q |
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| T |
35501473 |
gactaaggaattcaaatatctggtttgttttcttatgtttgttcctttgactaacattttgacagatatagatattaatgactgggacttagattggcat |
35501374 |
T |
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| Q |
208 |
cacatatcatttcttatgttgatattttctattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagc |
307 |
Q |
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| T |
35501373 |
cacatatcatttcttatgttgatattttctattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagc |
35501274 |
T |
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| Q |
308 |
aactttctgttagcgggcgcaattggggagaagttgatttaaatggtcagtgatgtttacatgaattgactaatgtgttgaa |
389 |
Q |
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| T |
35501273 |
aactttctgttagtgggcgcaattggggagaagttgatttaaatggtcagtgatgtttacatgaactgactaatgtgttgaa |
35501192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 237 - 372
Target Start/End: Original strand, 7070123 - 7070258
Alignment:
| Q |
237 |
tattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttctgttagcgggcgcaattgggga |
336 |
Q |
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| T |
7070123 |
tattttgtaggatgttgtaagcttgacaagtttcttccaaaacaccttcggagtaactgttggggagaagcaactttctgttactgggcgcaattgggga |
7070222 |
T |
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| Q |
337 |
gaagttgatttaaatggtcagtgatgtttacatgaa |
372 |
Q |
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| T |
7070223 |
gaagttgatctaaatggttggtgatctttacatgaa |
7070258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 7069880 - 7069935
Alignment:
| Q |
10 |
ggtgttcagatcaaagatgggttgttctacaaattcactggatttcgtgatcaggt |
65 |
Q |
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| T |
7069880 |
ggtgttcagatcaaagatgggttgttctacaaattcactggtttccgtgatcaggt |
7069935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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