View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9869_low_20 (Length: 406)
Name: NF9869_low_20
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 154 - 389
Target Start/End: Original strand, 1760624 - 1760859
Alignment:
| Q |
154 |
tgatcaaatgggttatcaggagaaggaaaagtagggaaaggccaatagccacaacatccaaatagataaaagaaaaatggatcacaaaatagacttttta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1760624 |
tgatcaaatgggttatcaggagaaggaaaagtagggaaaggccaatagccacaacatccaaatagataaaagaaaaatggatcacaaaatagacttttta |
1760723 |
T |
|
| Q |
254 |
tactttttcctacaaagtttctactactaatatttctagatcttgttaactcctcttcatgtttgtgattggaagttttattagtttcaacaagagtttg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1760724 |
tactttttcctacaaagtttctactactaatatttctagatcttgttaactcctcttcatgtttgtgattggaagttttattagtttcaacaagagtttg |
1760823 |
T |
|
| Q |
354 |
ttgtgtgaacaaaacaagtgctagtagtaaagctat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1760824 |
ttgtgtgaacaaaacaagtgctagtagtaaagctat |
1760859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University