View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_25 (Length: 365)
Name: NF9869_low_25
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 6140872 - 6140535
Alignment:
| Q |
7 |
atggacatcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgtcg |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6140872 |
atggacttcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgtcg |
6140773 |
T |
|
| Q |
107 |
agtacttggtgacctaggacctaacagcagaatcattatcacgacacgagacaggcgtacgcttagtggaaacgttgatgagatatatgaggtcaaaaca |
206 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6140772 |
agtacttggtgacctaggacctgacagcagaatcattatcacaacacgagacaggcatacgcttagtggaaaagttgatgagatatatgaggtcaaaaca |
6140673 |
T |
|
| Q |
207 |
tggaagcttaaagactctctaaatctttttagcttaagagccttcaagaaagcccaccctttaaagggttacgagcgagtctgtgaaagggcagttaaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
6140672 |
tggaagcttaaagactctctaaatctttttagcttaagagccttcaagaaagcccaccctttaaagggttacgagcgactctctgaaagggcagttaaat |
6140573 |
T |
|
| Q |
307 |
gcgcaggaggtgttccattagctttacaagttttgggt |
344 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
6140572 |
gcgcaggaggcgttccattagctttacaagttttgggt |
6140535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 6187717 - 6187382
Alignment:
| Q |
9 |
ggacatcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgtcgag |
108 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||| | |
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| T |
6187717 |
ggacttcacacattcatcacgaggaggctctttcgcaaaaaagttttcattgttcttgatgatgttaataatacgacacagttagatgatttgtgtcgcg |
6187618 |
T |
|
| Q |
109 |
tacttggtgacctaggacctaacagcagaatcattatcacgacacgagacaggcgtacgcttagtggaaacgttgatgagatatatgaggtcaaaacatg |
208 |
Q |
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||||||||||||| ||||||||||| ||| ||||||| || || |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
6187617 |
tacttggtgaccttggacctaacagtagactcattataacaacgcgagacaggcatacacttggtggaaaagttgatgagatatatgaggtcaaaacatg |
6187518 |
T |
|
| Q |
209 |
gaagcttaaagactctctaaatctttttagcttaagagccttcaagaaagcccaccctttaaagggttacgagcgagtctgtgaaagggcagttaaatgc |
308 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||| ||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||| |
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| T |
6187517 |
gaagcttagagactctctaaagctttttagcttaagagccttcaagcaagaccatcctttaaaaggttacgagcgtgtctctgaaagggcagttgaatgt |
6187418 |
T |
|
| Q |
309 |
gcaggaggtgttccattagctttacaagttttgggt |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
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| T |
6187417 |
gcaggaggtgttccattagctttagaagttttgggt |
6187382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 6178929 - 6178592
Alignment:
| Q |
7 |
atggacatcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgtcg |
106 |
Q |
| |
|
|||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
6178929 |
atggacttcacacgttcatcaagaggaggctctttcgcaaaaaagttttcattgtacttgatgatgttgataatgcttcacagttagatgatttgtgccg |
6178830 |
T |
|
| Q |
107 |
agtacttggtgacctaggacctaacagcagaatcattatcacgacacgagacaggcgtacgcttagtggaaacgttgatgagatatatgaggtcaaaaca |
206 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||| |||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
6178829 |
agtacttggtgaccttggacctaacagtagactcattatcactacgcgagacaggcatacgctaagtggaaaagttgatgaaatatatgaggtcaaaaca |
6178730 |
T |
|
| Q |
207 |
tggaagcttaaagactctctaaatctttttagcttaagagccttcaagaaagcccaccctttaaagggttacgagcgagtctgtgaaagggcagttaaat |
306 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| |||||||||||||| ||| ||| ||||||||||||||||| | ||| ||||| |||||| ||| |
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| T |
6178729 |
tggaggcttaaagactctctaaagctttttagcctaagagccttcaagcaagaccatcctttaaagggttacgaatgtttctcggaaagagcagttgaat |
6178630 |
T |
|
| Q |
307 |
gcgcaggaggtgttccattagctttacaagttttgggt |
344 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||| |
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| T |
6178629 |
gtgcaggaggtgttccattagctttagaagttttgggt |
6178592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 45 - 344
Target Start/End: Original strand, 6123976 - 6124275
Alignment:
| Q |
45 |
aaaaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgtcgagtacttggtgacctaggacctaacagcagaatcatta |
144 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || || |||||| |||||||| ||| ||| ||| || | ||| || || |||||||||| |
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| T |
6123976 |
aaaagagttttcattgtacttgatgatgttgataatggtatgcaattagattatttgtgtggagaactcaatgatcttgcaccaaatagtagaatcatta |
6124075 |
T |
|
| Q |
145 |
tcacgacacgagacaggcgtacgcttagtggaaacgttgatgagatatatgaggtcaaaacatggaagcttaaagactctctaaatctttttagcttaag |
244 |
Q |
| |
|
|||| ||| | | ||| ||| |||| ||||| ||||||||||||||||||||| ||| ||||||| | ||||| |||||| | |||||| |||| |
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| T |
6124076 |
tcacaacaaaaaatagggatactcttaatggaagagttgatgagatatatgaggtcgaaaaatggaagttcaaagaatctctagaacttttttgcttggc |
6124175 |
T |
|
| Q |
245 |
agccttcaagaaagcccaccctttaaagggttacgagcgagtctgtgaaagggcagttaaatgcgcaggaggtgttccattagctttacaagttttgggt |
344 |
Q |
| |
|
|||||||||| || || ||| | |||||| ||||| ||| ||||||||||||| || ||| |||||||||| ||||||||| ||||||||||| |
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| T |
6124176 |
agccttcaagcaaaagcatcctaaagtgggttatgagcgtctctctgaaagggcagttgcgtgtgcacgaggtgttcccttagctttaaaagttttgggt |
6124275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 344
Target Start/End: Complemental strand, 6087657 - 6087429
Alignment:
| Q |
116 |
tgacctaggacctaacagcagaatcattatcacgacacgagacaggcgtacgcttagtggaaacgttgatgagatatatgaggtcaaaacatggaagctt |
215 |
Q |
| |
|
|||||| ||||| |||| ||| |||||||||| ||| |||||| | || |||| ||||| ||||||||||||||||||||||||| ||||||| || |
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|
| T |
6087657 |
tgaccttggaccacacagtagactcattatcacaacaagagacaaacatattcttaatggaacagttgatgagatatatgaggtcaaaaaatggaagttt |
6087558 |
T |
|
| Q |
216 |
aaagactctctaaatctttttagcttaagagccttcaag-aaagcccaccctttaaagggttacgagcgagtctgtgaaagggcagttaaatgcgcagga |
314 |
Q |
| |
|
||||| |||||||| |||||||| ||| ||||||||||| |||| ||| | |||||||| | || ||| |||||||||||| ||| |||||| |
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|
| T |
6087557 |
aaagaatctctaaagctttttagtttaggagccttcaagcaaagttttccc-atggagggttacaaacgtttctcagaaagggcagttgaatatgcagga |
6087459 |
T |
|
| Q |
315 |
ggtgttccattagctttacaagttttgggt |
344 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
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|
| T |
6087458 |
ggtgttccattagctttaaaagttttgggt |
6087429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 6062548 - 6062341
Alignment:
| Q |
47 |
aaaagttttcattgtacttgatgatgttgataatgct-acacagttagatgatttgtgtcgagtacttggtgacctaggacctaacagcagaatcattat |
145 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||| | |||||| |||||||| | || |||| ||| ||||| | || ||| ||||||| |
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|
| T |
6062548 |
aaaagttttcattgtacttgatgacgtagataatgcttacata-ttagattatttgtgtgaacctctaggtggccttggaccacaaagtagactcattat |
6062450 |
T |
|
| Q |
146 |
cacgacacgagacaggcgtacgcttagtggaaacgttgatgagatatatgaggtcaaaacatggaagcttaaagactctctaaatctttttagcttaaga |
245 |
Q |
| |
|
||| || |||||| | || |||||||||| |||||||||||||||||||| | || ||||||| || |||| |||| ||| ||||| | ||| || |
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|
| T |
6062449 |
cacaacgagagacaaacatattcttagtggaacagttgatgagatatatgaggttacaaaatggaagtttgaagaatctcaaaagcttttctgtttagga |
6062350 |
T |
|
| Q |
246 |
gccttcaag |
254 |
Q |
| |
|
||||||||| |
|
|
| T |
6062349 |
gccttcaag |
6062341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 6046302 - 6046216
Alignment:
| Q |
47 |
aaaagttttcattgtacttgatgatgttgataatgctacacagttagatgatttgtgtcgagtacttggtgacctaggacctaacag |
133 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||| ||||| ||||||| || ||||| |||||| ||||| ||||| |
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|
| T |
6046302 |
aaaatttttcattgtacttgatgatgtggataatgctgcacaattagaatatttgtgctcagaacttgatgaccttggaccaaacag |
6046216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 6062291 - 6062255
Alignment:
| Q |
304 |
aatgcgcaggaggtgttccattagctttacaagtttt |
340 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |
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| T |
6062291 |
aatgtgcaggaggtgttccattagctttaaaagtttt |
6062255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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