View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_26 (Length: 363)
Name: NF9869_low_26
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 16012387 - 16012715
Alignment:
| Q |
17 |
gtgtttgaataggttttaagtgtttgttcttcatttttcactggacatcatcattctagggattatgtagccattgaatttatatagtagtttacatatc |
116 |
Q |
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| T |
16012387 |
gtgtttgaataggttttaagtgtttgttcttcatttttcactggacatcatcattctagggattatgtagccattgaatttatatagtagtttacatatc |
16012486 |
T |
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| Q |
117 |
tgcaatatgaatttcaaaatgatta-taacttgatatgatatactaaatattatgtttcttaggtgctccacttacttaattttatgtttttgtgtgaag |
215 |
Q |
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| T |
16012487 |
tgcaatatgaatttcaaaatgattaataacttgatatgatatactaaatattatgttgcttaggtgctccacttacttaattttatgtttttgtgtgaag |
16012586 |
T |
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| Q |
216 |
gcattcattacattaaaaagaggaacccagttagttaagtatagtcgacaagggaagccaaaactttgtaatttcaggctgtcacaggtgannnnnnnnn |
315 |
Q |
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| T |
16012587 |
gcattcattacattaaaaagaggaacccagttagttaagtatagtcgacaagggaagccgaaactttgtaatttcaggctgtcacaggtga-tttttttt |
16012685 |
T |
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| Q |
316 |
accacgaaaagttttgtttataaattatat |
345 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16012686 |
accacgaaaagttttgtttataaattatat |
16012715 |
T |
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