View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9869_low_27 (Length: 359)

Name: NF9869_low_27
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9869_low_27
NF9869_low_27
[»] chr3 (3 HSPs)
chr3 (182-339)||(2782514-2782671)
chr3 (11-92)||(2782343-2782424)
chr3 (271-350)||(18973100-18973179)
[»] chr2 (1 HSPs)
chr2 (190-350)||(42048555-42048715)
[»] chr8 (2 HSPs)
chr8 (184-350)||(31180275-31180440)
chr8 (271-350)||(40530935-40531014)
[»] chr1 (1 HSPs)
chr1 (310-350)||(38564604-38564644)
[»] chr7 (2 HSPs)
chr7 (299-348)||(26231835-26231884)
chr7 (319-350)||(46262465-46262496)
[»] chr6 (1 HSPs)
chr6 (310-348)||(12128599-12128637)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 182 - 339
Target Start/End: Original strand, 2782514 - 2782671
Alignment:
Q  182 acgcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtct 281  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||| |||||||| ||    
T  2782514 acgcaccccaacaacaccactagagatccacagaaaccacacgcaaacacccgaagcacagcgatctcgtaccaacagcaagctacttaatgtaccgcct 2782613  T
Q  282 ttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgca 339  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  2782614 ttcatcgtaaaggagataaaccaccaaccatctaaagactggatccaccacaattgca 2782671  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 2782343 - 2782424
Alignment:
Q  11 acatcaccaagacagcaaaacaacatcaccaatccctacaaacaaaccctagaacgcgtagggaaaacatccaaaggccata 92  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2782343 acatcaccaagacaacataacatcatcaccaatccctacaaacaaaccccataacgcgtagggaaaacatccaaaggccata 2782424  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 18973179 - 18973100
Alignment:
Q  271 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 350  Q
    |||||||||||||| |||   |||||| ||| | | || |||||| |||||||||||||||||| |||||||||||||||    
T  18973179 atgtaccgtctttcttcgcggaggagaaaaatctcaaatcatccaaagactggatccaccacaactgcacgaccctttgc 18973100  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 42048555 - 42048715
Alignment:
Q  190 caacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtctttcatcgt 289  Q
    |||||||| ||||||||||||| | ||||||||||| ||||||| | |||||  || ||||||  |||| |||| |||||   ||||| ||||||||||     
T  42048555 caacaacaccaccagagatccatataaaccacacgcgaacacccaacgcacaacgaccccgtacaaacaacaagatacttaccgtaccatctttcatcgc 42048654  T
Q  290 aaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 350  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  42048655 gaaggagataaaccaccaaccatccagagactggatccaccacaactgcaagaccctttgc 42048715  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 350
Target Start/End: Original strand, 31180275 - 31180440
Alignment:
Q  184 gcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtcttt 283  Q
    ||||| || ||||| ||||| |||| |||| |||| || ||||||||||  ||||||| | |||||  | ||||| ||||||||||  |||||| |||||    
T  31180275 gcaccacaccaacaccaccaaagattcacataaac-actcgcaaacacctaaagcacaattatcccaaaccaacaacaagctacttattgtaccttcttt 31180373  T
Q  284 catcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 350  Q
    |  ||  ||||||| | ||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  31180374 cggcgcgaaggagagacaccaccaaccatccaaagactgaatccaccacaactgcacgaccctttgc 31180440  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 40531014 - 40530935
Alignment:
Q  271 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 350  Q
    |||||||||||||| |||  ||||||| ||| | | || ||||||| ||||||||||||||||| |||||||||||||||    
T  40531014 atgtaccgtctttcttcgcgaaggagaaaaatctcaaatcatccagggactggatccaccacaactgcacgaccctttgc 40530935  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 38564644 - 38564604
Alignment:
Q  310 catccagagactggatccaccacaattgcacgaccctttgc 350  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  38564644 catccagagactggatccaccacaactgcacgaccctttgc 38564604  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 26231884 - 26231835
Alignment:
Q  299 aaaccaccaaccatccagagactggatccaccacaattgcacgacccttt 348  Q
    ||||||||||||||||||| ||||||||||||||||   |||||||||||    
T  26231884 aaaccaccaaccatccagaaactggatccaccacaaccacacgacccttt 26231835  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 46262465 - 46262496
Alignment:
Q  319 actggatccaccacaattgcacgaccctttgc 350  Q
    ||||||||||||||||||||||||||||||||    
T  46262465 actggatccaccacaattgcacgaccctttgc 46262496  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 12128637 - 12128599
Alignment:
Q  310 catccagagactggatccaccacaattgcacgacccttt 348  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  12128637 catccagagactggatccaccacaactgcacggcccttt 12128599  T

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