View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9869_low_28 (Length: 354)
Name: NF9869_low_28
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 40662361 - 40662655
Alignment:
| Q |
1 |
ttctttgaaacaaaggagagaaacggttattcccattatattcaaagtggaatacttggatttgcaggacgacccacaattcacaagacttgtttcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662361 |
ttctttgaaacaaaggagagaaacggttattcccattatattcaaagtagaatacttggatttgcaggacgacccacaattcacaagacttgtttcatga |
40662460 |
T |
|
| Q |
101 |
tcatgcaaaagggactgaaccacagatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatccttagtgtgtgtaca |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662461 |
tcatgcaaaagggactgaaccacaaatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatccttagtgtgtgtaca |
40662560 |
T |
|
| Q |
201 |
annnnnnnccatcacagacttatttgagaatgacaacatcgcaaatttttgatttaccgagacagcaatgtaacaaaaatcttaaagtgtctaat |
295 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40662561 |
atttttttccatcacagacttatttgagaatgacaacatcacaggtttttgatttaccgagacagcaatgtaacaaaaaccttaaagtgtctaat |
40662655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 40676029 - 40676114
Alignment:
| Q |
106 |
caaaagggactg--aaccacagatcatgattctttcactatttactttctagagcatcttctgtgtattcctatctttgatcctta |
189 |
Q |
| |
|
|||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40676029 |
caaaagggactgtgaaccataaatcaggattctttcactatttactttctagagcatcttctgtgtattcatatctttgatcctta |
40676114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 40675905 - 40675996
Alignment:
| Q |
3 |
ctttgaaacaaaggagagaaacggttattcccattatattcaaagtggaatacttggatttgcaggacgacccacaattcacaagacttgttt |
95 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||| |||| || ||||||||||| || | ||||||||||| |||||||| |
|
|
| T |
40675905 |
ctttgaaacaaaggagagaagtggtttttcccattatattcaaagtagaat-ctctgatttgcaggatgatcgacaattcacaaaacttgttt |
40675996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University