View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_29 (Length: 327)
Name: NF9869_low_29
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 40675708 - 40675564
Alignment:
| Q |
94 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
193 |
Q |
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| T |
40675708 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
40675609 |
T |
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| Q |
194 |
tggaaattatgcgctctacgtctatgcacagaaggccctccctcc |
238 |
Q |
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| T |
40675608 |
tggaaattacgcgctctacgtttatgcacagaaggccctccctcc |
40675564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 40662152 - 40662007
Alignment:
| Q |
94 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40662152 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccagacttgattgttctcctcgttattggtgggttgctgttgacatttctcat |
40662053 |
T |
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| Q |
194 |
tggaaattatgcgctctacgtctatgcacagaaggccctccctccc |
239 |
Q |
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| T |
40662052 |
tggaaattatgcggtctacgtctatgcacagaaggccctccctccc |
40662007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 40656866 - 40656732
Alignment:
| Q |
104 |
gggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcattggaaattat |
203 |
Q |
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| T |
40656866 |
gggaaatatttagaaagctggatctcaagggttcaacccaggcttagtagttctcctggttattggtgggctgctgttgacattcctcattggaaattat |
40656767 |
T |
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| Q |
204 |
gcgctctacgtctatgcacagaaggccctccctcc |
238 |
Q |
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| T |
40656766 |
gcgctttatgtttatgcacagaaggccctccctcc |
40656732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 40661967 - 40661936
Alignment:
| Q |
279 |
gagaggctgaagcaaggagtctctgcacctgg |
310 |
Q |
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| T |
40661967 |
gagaggctgaagcaaggagtctctgcacctgg |
40661936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 40675523 - 40675492
Alignment:
| Q |
279 |
gagaggctgaagcaaggagtctctgcacctgg |
310 |
Q |
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| T |
40675523 |
gagaggctgaagcaaggagtctctgcacctgg |
40675492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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