View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_3 (Length: 613)
Name: NF9869_low_3
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 553
Target Start/End: Original strand, 35994827 - 35995343
Alignment:
| Q |
20 |
gcagggtcccaaccagtaccagtaatggtgttattcccattatcccaaagctctctcaaatcttcttctttccaattctcataatcaggtggaaaatcaa |
119 |
Q |
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| T |
35994827 |
gcagggtcccaaccagtaccagtaatggtgttattcccattatcccaaagctctctcaagtcttcttctttccaattctcataatcaggtggaaaatcaa |
35994926 |
T |
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| Q |
120 |
acgggttacgatgtttaatcttgcgacgaannnnnnnctcgtagtatttttcaactttttcggaatgataagcttcgattacgtctttgaagttttgttc |
219 |
Q |
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| T |
35994927 |
acgggttatgatgttgaaccttgcgacgaatttttttttcgtagtatttttcaactttttcggaatgataagcttcgattacgcctttgaagttttgttc |
35995026 |
T |
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| Q |
220 |
tgggtcgaattcggagtctgagactggtgcttcggtgttttgggcgatgaatgagttgagataagattcgatatcgaggtcttcttggggggtttctaat |
319 |
Q |
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| T |
35995027 |
tgggtcgaattcggagtctgggactggtgcttcggtgttttgggcgatgaatgagttgagataagattcgatatcgaggtcttcttggggggtttctgat |
35995126 |
T |
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| Q |
320 |
tctgcgtcggaagatgagtcggagtcggaatcggaggggtttttggagtcggaggtgggtggtggtggaggtttttggaagcggcgaaggaggaacattg |
419 |
Q |
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| T |
35995127 |
tctgcgtcggaagatgagtcggagtcggaatcggaggggtttttggagtcggaggtgggtggtggtggaggtttttggaagcggcgaaggaggaacattg |
35995226 |
T |
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| Q |
420 |
ttgaagataaggttggttgttgtttgcgggaaatgaagatatgaaagctgcaatgtgtgagagtgagagagtgttcccattcaagtttaattaatgtaga |
519 |
Q |
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| T |
35995227 |
ttgaagataaggttggttgttgtttgcgggaaatgaagatatgaaagct----tgt-------------agtatttccattcaagtttaattaatgtaga |
35995309 |
T |
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| Q |
520 |
taattatttactagctgtaaataggtaaatattt |
553 |
Q |
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| T |
35995310 |
taattatttactagctgtaaataggtaaatattt |
35995343 |
T |
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