View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9869_low_31 (Length: 316)

Name: NF9869_low_31
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9869_low_31
NF9869_low_31
[»] chr7 (7 HSPs)
chr7 (2-114)||(29617802-29617914)
chr7 (115-169)||(223552-223607)
chr7 (130-165)||(26253085-26253120)
chr7 (115-179)||(9939426-9939491)
chr7 (115-179)||(10027618-10027683)
chr7 (115-179)||(29241530-29241595)
chr7 (116-179)||(36698744-36698808)
[»] chr6 (4 HSPs)
chr6 (115-178)||(24608306-24608371)
chr6 (115-179)||(30124176-30124240)
chr6 (130-179)||(11574463-11574512)
chr6 (112-162)||(30832685-30832735)
[»] chr4 (11 HSPs)
chr4 (113-170)||(3850593-3850651)
chr4 (112-165)||(16924662-16924715)
chr4 (115-175)||(31984820-31984881)
chr4 (130-179)||(979385-979434)
chr4 (120-162)||(40089330-40089372)
chr4 (115-162)||(38352507-38352554)
chr4 (198-228)||(3850680-3850710)
chr4 (114-179)||(25887285-25887351)
chr4 (115-179)||(29690934-29690999)
chr4 (130-179)||(45996891-45996940)
chr4 (130-170)||(7443710-7443750)
[»] chr3 (3 HSPs)
chr3 (115-179)||(11467757-11467822)
chr3 (115-179)||(25373625-25373690)
chr3 (130-169)||(40740227-40740266)
[»] chr8 (8 HSPs)
chr8 (113-179)||(45294580-45294647)
chr8 (118-179)||(4322486-4322548)
chr8 (130-179)||(1176226-1176275)
chr8 (115-179)||(33978655-33978720)
chr8 (130-179)||(7587911-7587960)
chr8 (130-179)||(9491942-9491991)
chr8 (115-179)||(15270126-15270191)
chr8 (115-179)||(33963498-33963563)
[»] chr5 (6 HSPs)
chr5 (115-179)||(31068109-31068174)
chr5 (130-179)||(8433576-8433625)
chr5 (115-178)||(35192177-35192240)
chr5 (130-176)||(41842825-41842871)
chr5 (132-162)||(15523691-15523721)
chr5 (132-162)||(39544277-39544307)
[»] chr2 (6 HSPs)
chr2 (198-299)||(52828-52929)
chr2 (114-160)||(5558751-5558797)
chr2 (130-175)||(52955-53000)
chr2 (130-179)||(7763664-7763713)
chr2 (130-173)||(35321186-35321229)
chr2 (130-170)||(34620195-34620235)
[»] chr1 (4 HSPs)
chr1 (130-179)||(12037605-12037653)
chr1 (129-179)||(24184492-24184542)
chr1 (198-299)||(12037669-12037770)
chr1 (130-179)||(52128451-52128500)
[»] scaffold0369 (1 HSPs)
scaffold0369 (115-179)||(14373-14438)
[»] scaffold0027 (1 HSPs)
scaffold0027 (115-162)||(4149-4197)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 29617802 - 29617914
Alignment:
Q  2 cacaactcgtaaataactatttccatacaaactcattttgaacctctatgcaactcaactagatcctaaaacgccattgtcatgcattgattccttttct 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29617802 cacaactcgtaaataactattttcatacaaactcattttgaacctctatgcaactcaactagatcctaaaacgccattgtcatgcattgattccatttct 29617901  T
Q  102 tctttcataatag 114  Q
    |||||||||||||    
T  29617902 tctttcataatag 29617914  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 223552 - 223607
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaattt 169  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  223552 cagggccggcaatgagggggtgcaaacagctctactgagctgggcgtccaaaattt 223607  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 26253085 - 26253120
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaa 165  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26253085 ggggtgcaaacagctcttctgagctgggcctccaaa 26253120  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 9939491 - 9939426
Alignment:
Q  115 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  9939491 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 9939426  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 10027618 - 10027683
Alignment:
Q  115 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  10027618 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 10027683  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 29241595 - 29241530
Alignment:
Q  115 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29241595 cagggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29241530  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 36698808 - 36698744
Alignment:
Q  116 agggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  36698808 agggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 36698744  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 24608371 - 24608306
Alignment:
Q  115 cagggccggccatgagggg--tgcaaacagctctactgagctgggcctccaaaatttgagggccca 178  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  24608371 cagggccggccatgaggggggtgcaaacagctctactgagctgggcctccaaaattttggggccca 24608306  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 30124240 - 30124176
Alignment:
Q  115 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||| |||| ||||||||    
T  30124240 cagggccggcctttaggggtgcaaacagctctaatgagttgggcctccaaattttgggggcccaa 30124176  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 11574463 - 11574512
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||| | ||||||    
T  11574463 ggggtgcaaacagctctactgagctgggcctcaaaattttgggtgcccaa 11574512  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 30832735 - 30832685
Alignment:
Q  112 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 162  Q
    |||||||| || || ||||||||||||||||||| | ||||||||||||||    
T  30832735 tagcaggggcgtccttgaggggtgcaaacagctcaaatgagctgggcctcc 30832685  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 3850593 - 3850651
Alignment:
Q  113 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttg 170  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3850593 agcagggccggccatgagggggtgcaaacagctatactgagctgggcctccaaaatttg 3850651  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 16924715 - 16924662
Alignment:
Q  112 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaa 165  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  16924715 tagcagggccggccttgaggggtacaaacagctctactgagctgggccttcaaa 16924662  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 31984881 - 31984820
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggc 175  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  31984881 cagggccggccttgagggggtgcaaacagctctactgagccgggcctccaaaatttgggggc 31984820  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 979385 - 979434
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  979385 ggggtgcaaacagctctactgagctgggcctcctaaatttggaggcccaa 979434  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 40089330 - 40089372
Alignment:
Q  120 ccggccatgaggggtgcaaacagctctactgagctgggcctcc 162  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  40089330 ccggccatgaggggtgcaaacagctcaacagagctgggcctcc 40089372  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 38352554 - 38352507
Alignment:
Q  115 cagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 162  Q
    |||| |||||| ||||||||||||||||||| || |||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcc 38352507  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 3850680 - 3850710
Alignment:
Q  198 atatatgctgcatggaaataaataatatata 228  Q
    |||||||||||||||||||||||||||||||    
T  3850680 atatatgctgcatggaaataaataatatata 3850710  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 25887351 - 25887285
Alignment:
Q  114 gcagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  25887351 gcagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 25887285  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 29690999 - 29690934
Alignment:
Q  115 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29690999 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29690934  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 45996940 - 45996891
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  45996940 ggggtgcaaacagctctaccgagctgggtctcccaaatttggaggcccaa 45996891  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 7443710 - 7443750
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttg 170  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  7443710 ggggtgcaaacagctctaccgaaccgggcctccaaaatttg 7443750  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 11467757 - 11467822
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  11467757 cagggctggccatgagggggtgcaaacagctctactgagctgggccttcaaaattttagggcccaa 11467822  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 25373690 - 25373625
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  25373690 cagggccgaccatgagggggtgcaaacagctctactgagctgggcctccaaaattttggggcccaa 25373625  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 40740227 - 40740266
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaattt 169  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  40740227 ggggtgcaaacagctctactgagttgggcctcctaaattt 40740266  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 45294647 - 45294580
Alignment:
Q  113 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  45294647 agcagggccgtccttgagggggtgcaaacagctctaatgagctgggcctccaaaatttgggggcccaa 45294580  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 4322548 - 4322486
Alignment:
Q  118 ggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| ||||||  ||||||||    
T  4322548 ggccggccatgagggggtgcaaacagctctattgagctgggcctcctaaattttggggcccaa 4322486  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 1176275 - 1176226
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  1176275 ggggtgcaaacagctctactgagctagacctccaaaatttgggggcccaa 1176226  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 33978720 - 33978655
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||  |||||||    
T  33978720 cagggccggccttgagggggtgcaaacagctctactgagctgagcctccaaattttggaggcccaa 33978655  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 7587911 - 7587960
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||||||| |||||  |||||||||| || ||||||||    
T  7587911 ggggtgcaaacagctctactaagctgaacctccaaaatatgggggcccaa 7587960  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 9491991 - 9491942
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||||||||||||||||||| ||| |||| |||  ||||||||    
T  9491991 ggggtgcaaacagctctactgagctggaccttcaaattttaggggcccaa 9491942  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 15270191 - 15270126
Alignment:
Q  115 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  15270191 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 15270126  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 33963563 - 33963498
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||  |||||||| ||||  |||||||    
T  33963563 cagggccggccttgagggggtgcaaacagctctactgcgctgaacctccaaattttggaggcccaa 33963498  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 31068174 - 31068109
Alignment:
Q  115 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||  ||||||||    
T  31068174 cagggccggccataagggggtgcagacagctctactgagctgggcctccaaaattttggggcccaa 31068109  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 8433625 - 8433576
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  8433625 ggggtgcaaacagctctaatgagctgggcctccaaattttgggggcccaa 8433576  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 35192177 - 35192240
Alignment:
Q  115 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggccca 178  Q
    ||||||||| | || ||||||||||||||||||||||||||| |||||||| |||  |||||||    
T  35192177 cagggccggtcttgtggggtgcaaacagctctactgagctggacctccaaattttaggggccca 35192240  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 41842825 - 41842871
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcc 176  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  41842825 ggggtacaaacagctctactgagctgggccttcaaaatttgggggcc 41842871  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 15523691 - 15523721
Alignment:
Q  132 ggtgcaaacagctctactgagctgggcctcc 162  Q
    |||||||||||||||||||||||||||||||    
T  15523691 ggtgcaaacagctctactgagctgggcctcc 15523721  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 39544277 - 39544307
Alignment:
Q  132 ggtgcaaacagctctactgagctgggcctcc 162  Q
    |||||||||||||||||||||||||||||||    
T  39544277 ggtgcaaacagctctactgagctgggcctcc 39544307  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 52929 - 52828
Alignment:
Q  198 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 297  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||  || |||  |||  ||||||||  ||| ||||||||||||||| | ||||||||    
T  52929 atatatgctgcatggaaataaataatatatacatgtggcgtggaaaattttcaagtatgtctaaatggttgagtggtaagaatgggaatctgcattgcat 52830  T
Q  298 ag 299  Q
    ||    
T  52829 ag 52828  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 5558797 - 5558751
Alignment:
Q  114 gcagggccggccatgaggggtgcaaacagctctactgagctgggcct 160  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5558797 gcagggccgggcatgaggggtgcaaacagctctattgagctgggcct 5558751  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 53000 - 52955
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggc 175  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  53000 ggggtgcaagcagctctactgagctgggcctccaaaatttgggggc 52955  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 7763664 - 7763713
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  7763664 ggggtgcaaacagctctactgagttgggcttccaaaatttgggagcccaa 7763713  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 35321229 - 35321186
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagg 173  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  35321229 ggggtgcaaacagctctactgaactgggcctccaatttttgagg 35321186  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 34620235 - 34620195
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttg 170  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  34620235 ggggtgcaaacaactctactgagctaggcctccaaattttg 34620195  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 12037605 - 12037653
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12037605 ggggtgcaaacagctctactgagctgggcctccaaaattt-agggcccaa 12037653  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 24184542 - 24184492
Alignment:
Q  129 aggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  24184542 aggggtgcaaacagctatattgagctgggcctccaaattttgggggcccaa 24184492  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 12037669 - 12037770
Alignment:
Q  198 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 297  Q
    |||||||||||| ||||||||||| ||||||| ||  ||||| || ||| |||  |||  |||| |||  |||||||||||||||||| ||  |||||||    
T  12037669 atatatgctgcacggaaataaatagtatatacttgtggcgcgaaaagttttcaagtatgtctaactggccgagcggtaagaatgggaaattgtattgcat 12037768  T
Q  298 ag 299  Q
    ||    
T  12037769 ag 12037770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 52128500 - 52128451
Alignment:
Q  130 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    |||||||||||||||||| || ||||||||||| |||||||  |||||||    
T  52128500 ggggtgcaaacagctctattgggctgggcctcctaaatttggaggcccaa 52128451  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 14373 - 14438
Alignment:
Q  115 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 179  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  14373 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 14438  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 4149 - 4197
Alignment:
Q  115 cagggccggccatgag-gggtgcaaacagctctactgagctgggcctcc 162  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  4149 cagggccggccctgagagggtgcaaacagctcaacagagctgggcctcc 4197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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