View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9869_low_35 (Length: 297)
Name: NF9869_low_35
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 39 - 284
Target Start/End: Complemental strand, 3034185 - 3033940
Alignment:
| Q |
39 |
ccttcaactttgtgtttaagttttagtttaatttgttgaaatttagacaggtttaatgttattgatgttggttgtggagattagtagaatgatatcttag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034185 |
ccttcaactttgtgtttaagttttagtttaatttgttgaaatttagacagatttaatgttattgatgttggttgtggagattagtagaatgatatcttag |
3034086 |
T |
|
| Q |
139 |
gttgaggattgaaatttaatattttgtatgttttttatgtttgaggattgaaatttagacagatttatgatgtttggttttgaggattgattgctatgtt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034085 |
gttgaggattgaaatttaatattttgtatgttttttatgtttgaggattgaaatttagacagatttatgatgtttggttttgaggattgattgctatgtt |
3033986 |
T |
|
| Q |
239 |
tgtggttgtggtgattagtagaatgatatcttaggctgaggattga |
284 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
3033985 |
tgtggttgtggtgattagtagaatgaaatcttagaatgaggattga |
3033940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 3034117 - 3034061
Alignment:
| Q |
241 |
tggttgtggtgattagtagaatgatatcttaggctgaggattgaaatttaatatttt |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3034117 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatatttt |
3034061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 3033915 - 3033838
Alignment:
| Q |
208 |
atgtttggttttgaggattgattgctatgtttgtggttgtggtgattagtagaatgatatcttaggctgaggattgaa |
285 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||| |||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
3033915 |
atgtttggttttgagaattgattgctgtttttgtggttttggtgattagtagagtgaagtcttaggatgaggattgaa |
3033838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 3033712 - 3033645
Alignment:
| Q |
107 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgtttttt |
174 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
3033712 |
tggttttggagatttgtagaatgaaatcttaggttgaggattgttatttaagattctgtatgtttttt |
3033645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 3033623 - 3033490
Alignment:
| Q |
51 |
tgtttaagttttagtttaatttgttgaaatttagacaggtttaatgttattgatgt----------tggttgtggagattagtagaatgatatcttaggt |
140 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| ||| ||||| |||||||| | || |||||| | |
|
|
| T |
3033623 |
tgtttaaggtttagttgaatttgttgaaatggagacagatttaatgttattgatgtcgcgaaaatgtggctgtggtgattagtaagaagaaatcttatat |
3033524 |
T |
|
| Q |
141 |
tgaggattgaaatttaatattttgtatgtttttt |
174 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| |
|
|
| T |
3033523 |
tgaggattgaaattaaagattttgtatgtttttt |
3033490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 3033983 - 3033920
Alignment:
| Q |
107 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgtt |
170 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
3033983 |
tggttgtggtgattagtagaatgaaatcttagaatgaggattgaggtttagaattttgtatgtt |
3033920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 3033882 - 3033813
Alignment:
| Q |
107 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgttttttatg |
177 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||||| ||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
3033882 |
tggttttggtgattagtagagtgaagtcttaggatgaggattgaagtttta-attttgtatgttttttatg |
3033813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 6579260 - 6579223
Alignment:
| Q |
140 |
ttgaggattgaaatttaatattttgtatgttttttatg |
177 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
6579260 |
ttgagcattgaaatttaagattttgtatgttttttatg |
6579223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 29710907 - 29710870
Alignment:
| Q |
140 |
ttgaggattgaaatttaatattttgtatgttttttatg |
177 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
29710907 |
ttgagcattgaaatttaagattttgtatgttttttatg |
29710870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University