View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9869_low_37 (Length: 293)
Name: NF9869_low_37
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 36223352 - 36223621
Alignment:
| Q |
7 |
gcatcgtcatcctcctcgagacgattgaacttaaaacaagtcaaaattgtccctaaggtctatgttaaaacttttgcagggataacttttggaacaaaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36223352 |
gcatcgtcatcctcctcgagacgattgaacttaaaacaagtcaaaattgtccctaaggtctatgttaaaacatttgcagggataacttttggaacaaaca |
36223451 |
T |
|
| Q |
107 |
attgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatttcttcaaata-ctataaat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36223452 |
attgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatttcttcaaatatctataaat |
36223551 |
T |
|
| Q |
206 |
gaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaattgttagttcgttactaagtctgca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36223552 |
gaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaattgttagttcgttactaagtctgca |
36223621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 39426636 - 39426791
Alignment:
| Q |
88 |
ataacttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatt |
187 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
39426636 |
ataacttttcgaacaaactactgaaagaattgaatgatcattgatttaagaa-gaattaaaacctacggcagtcgctcctttaaacatgcaatattaatt |
39426734 |
T |
|
| Q |
188 |
tcttcaaatactataaatgaaaatagcaaaccaaaaatagattgctgcatctagaca |
244 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39426735 |
tcttcaaatactaaaaatgaaaataaaaaaccaaaaatagattgctgcatctagaca |
39426791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 39425909 - 39426101
Alignment:
| Q |
38 |
taaaacaagtcaaaattgtccctaaggtctatgttaaaactt--------ttgcagggataacttttggaacaaacaattgaaagaattgaatgatcatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
39425909 |
taaaacaagtcaaaattgtccctaagatctatgttaaaacttaaaactgctagcagggataacttttcaaacaaacaattgaaacaattgaatgatcatt |
39426008 |
T |
|
| Q |
130 |
gatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatatta-atttcttcaaatactataaatgaaaatagcaaaccaa |
221 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
39426009 |
gatctacgaaagaattaaaacctacaacagtagctcctttaaacctgcaatattagatttcttcaaatactaaaaccgaaaatagcaaaccaa |
39426101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 9300646 - 9300803
Alignment:
| Q |
83 |
cagggataacttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatat |
182 |
Q |
| |
|
||||| ||| |||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| | || | ||||||||||||||| |
|
|
| T |
9300646 |
caggggtaatttttcgaacaaataattagaagaattgaatgatcattgatctgtgaaagaattaaaacctacaataggaattcctttaaacatgca---- |
9300741 |
T |
|
| Q |
183 |
taatttcttcaaatactataaatgaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaat |
251 |
Q |
| |
|
| ||||||||| | || |||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
9300742 |
-------tccaaatactaaatatcaaaatagcaaaccaaaaagagattgctgcatctggataccaaaat |
9300803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 9271464 - 9271599
Alignment:
| Q |
93 |
ttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatttcttc |
192 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||||||| | | ||||||||||||||||| | ||||| |||||||||| |||| | | |
|
|
| T |
9271464 |
tttttgaacaaataattacaagaattgaatgatcattgatttgataaagaattaaaacctacaatagtcattcctttaaacgtgca-----------tcc |
9271552 |
T |
|
| Q |
193 |
aaatactataaatgaaaatagcaaaccaaaaatagattgctgcatct |
239 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
9271553 |
aaatactaaaaatgaaaatagtaaaccaaaaagagattgctgcatct |
9271599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 9287323 - 9287479
Alignment:
| Q |
83 |
cagggataacttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatat |
182 |
Q |
| |
|
||||| |||||||| ||||||| |||| ||||||||||||||||||||||| || |||||||||||||||| | ||||| | |||| || ||||| |
|
|
| T |
9287323 |
caggggtaacttttcgaacaaataattagaagaattgaatgatcattgatctgag-aagaattaaaacctacaatagtcatttctttgaatatgca---- |
9287417 |
T |
|
| Q |
183 |
taatttcttcaaatactataaatgaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaat |
251 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||||||| |||| |||||| || || |||||||| |
|
|
| T |
9287418 |
-------tccaaatactaaaaatgaaaacagcaaaccaaaaagagatagctgcaactggataccaaaat |
9287479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 9300583 - 9300623
Alignment:
| Q |
40 |
aaacaagtcaaaattgtccctaaggtctatgttaaaacttt |
80 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
9300583 |
aaacaagtcaaaattgtccttaatgtttatgttaaaacttt |
9300623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 45241561 - 45241614
Alignment:
| Q |
135 |
aagaaagaattaaaacctacta-cagtcactcctttaaacatgcaatattaatt |
187 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
45241561 |
aagaaagaattaaaaccttttaacagtcattcctttaaacatgcaatattaatt |
45241614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University