View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9869_low_4 (Length: 604)
Name: NF9869_low_4
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 589
Target Start/End: Original strand, 5023842 - 5024415
Alignment:
| Q |
16 |
gtgttagtgttggatgaaagagaaagaccttctgagtcctcctcactattatcataagtgttcagtacttcatctgtcgaaataaatttgaagggaatca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5023842 |
gtgttagtgttggatgaaagagaaagaccttctgagtcctcctcactattatcgtaagtgttcagtacttcatctgtcgaaataaatttgaagggaatca |
5023941 |
T |
|
| Q |
116 |
taagtaaatggaagaaaaaatgtaattgatgaagtgatgcatatgacagatgattttagaccatttgaagttcaatctatgatgcttagaaaagaagtgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5023942 |
taagtaaatggaagaaaaaatgtaattgatgaagtgatgcatatgacagatgattttagaccatttgacattcaatctatgatgcttagaaaagaagtgt |
5024041 |
T |
|
| Q |
216 |
gaaatatacctaaatcttttgatatgtctgatttccttttaaccggagaaggtgggtcttctctatagaatgaagcatcaagaacagacacgggactggg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024042 |
gaaatatacctaaatcttttgatatgtctgatttccttttaaccggggaaggtgggtcttctctatagaatgaagcatcaagaacagacacgggactggg |
5024141 |
T |
|
| Q |
316 |
ttgttctgcagtaaccattgtttcaaccataaagctttccttgctcaagtcttgttctgcattctgatcatttctttccttcaaaggagacaatttttgt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024142 |
ttgttctgcagtaaccattgtttcaaccataaaactttccttgctcaagtcttgttctgcattctgatcatttctttccttcaaaggagacaatttttgt |
5024241 |
T |
|
| Q |
416 |
ctggatgttttgctcggcaaagacagatccggtgattgcctattttgttgtcttctgttactgctgatatctgattttgggctggttggtggggaacgtc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024242 |
ctggatgttttgctcggcaaagacagatccgttgattgcctattttgttgtcttctgttactgctgatatctgattttgggctggttggtggggaacgtc |
5024341 |
T |
|
| Q |
516 |
tctccaaaccgaacttcttttgtagtcttggactcctagtctctgccataacgccggagttgttgttgttttct |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5024342 |
tctccaaaccgaacttcttttgtagtcttggactcctagtctctgccataacgccggagttggtgttgttttct |
5024415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 4558322 - 4558412
Alignment:
| Q |
222 |
tacctaaatcttttgatatgtctgatttccttttaaccggagaaggtgggtcttctctatagaatgaagcatcaagaacagacacgggact |
312 |
Q |
| |
|
||||||||| |||||| | || |||||| |||| || ||||| ||||| ||||| ||||||||| ||||||||||||||| || ||||| |
|
|
| T |
4558322 |
tacctaaattttttgaaacgttcgatttcgttttcactggagatggtggatcttccttatagaatgcagcatcaagaacagatacaggact |
4558412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University