View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_40 (Length: 261)
Name: NF9869_low_40
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 43188341 - 43188473
Alignment:
| Q |
1 |
tacatgaacacacaaaacatattggtgtcaattgtcacatcattcgcgagaagcttcaagtaaagttgttttgcctacttcatcatatacaatcaatgaa |
100 |
Q |
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| T |
43188341 |
tacatgaacgcacaaaacatattggtgtcaattgtcacatcattcgcgagaagcttcaagtaaagttgttttgcctacttcatcatatacaatcaatgaa |
43188440 |
T |
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| Q |
101 |
ctcaattcattctatttatcattttctctttac |
133 |
Q |
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| T |
43188441 |
ctcaattcattctatttatcattttctctttac |
43188473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 43188512 - 43188609
Alignment:
| Q |
143 |
agcgagtaatccatagtaaacaatgtaccaaagtgatccacgtacaattttcccactttaggaggattttatagtttgtggtccatctgttcttcctg |
240 |
Q |
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| T |
43188512 |
agcgagtaatccatagtaaacaatgtaccaaagtaatccgcgtacaattttcccactttaggaggattttatagtttgtggttcatctattcttcctg |
43188609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 43182335 - 43182382
Alignment:
| Q |
82 |
atcatatacaatcaatgaactcaattcattctatttatcattttctct |
129 |
Q |
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| T |
43182335 |
atcatttacaatcaatgaactcaattcattctattcatcattttctct |
43182382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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