View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_42 (Length: 256)
Name: NF9869_low_42
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 45695699 - 45695469
Alignment:
| Q |
1 |
catttagtatggccggtccagcaacaatgaaattgagtcagacatgttacataattacacaattacaatgcaggtagtgagtcatcaaccatcatatgcc |
100 |
Q |
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| T |
45695699 |
catttagtatggccggtccagcaacaatgtaattgagtcagacatgttacataattacacaattacaatgcaggtagtgagtcatcaaccatcatatgcc |
45695600 |
T |
|
| Q |
101 |
tataggctatatcgatgatatactatatctataggcttcctacaagctgtttttgtgttttgaataaagaaaagtggtacaatactacaaatgtacgtaa |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45695599 |
tata-------tcgatgatatactatatctataggcttcctacaagctgtttttgggttttgaataaagaaaagtggtacaatactacaaatgtacgtaa |
45695507 |
T |
|
| Q |
201 |
ttatctttttctgctactattcatttataggacgaatc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45695506 |
ttatctttttctgctactattcatttataggacgaatc |
45695469 |
T |
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