View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_44 (Length: 251)
Name: NF9869_low_44
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6445504 - 6445736
Alignment:
| Q |
1 |
cgttgaatttctaaggatctgtgaaccagaaaggtattatttgcaatagataatggcaaatgcaaacatgttcttgggaatcttggcaagtcacaatgtt |
100 |
Q |
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| T |
6445504 |
cgttgaatttctaaggatctgtgacctagaagggtattatttgcaatagataatggcaaatgcaaacatgttcttgggtatcttggcaagtcacaatgtt |
6445603 |
T |
|
| Q |
101 |
aatcgaactcaatnnnnnnnntaaaataaatcaacaatgatatatgtacctccaataattatctatatctattcaacatttcannnnnnnnatcacatta |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6445604 |
aatcgaactcaat---aaaaataaaataaatcaacaatgatatatgtacctccaataattatctatatctattcaacatttcattttctttatcacatta |
6445700 |
T |
|
| Q |
201 |
ttaatttattacatccatcgcatcactcttttctat |
236 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
6445701 |
ttaatttattacatctatcgcatcactcttttctat |
6445736 |
T |
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