View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_45 (Length: 250)
Name: NF9869_low_45
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 55171407 - 55171643
Alignment:
| Q |
1 |
cctttgcattcaggtaatctcttgggatgtggtactctgtttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttcc |
100 |
Q |
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| T |
55171407 |
cctttgcattcaggtaatctcttgggatgtggtactcttcttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttcc |
55171506 |
T |
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| Q |
101 |
gttcacccaaatcattccttttcccataccagtcatcctgatggcaactggacctcttccctctggtgtggcaaatcttgtcttcaaccaggagagagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55171507 |
gttcacccaaatcattccttttcccataccagtcatcctgatggcaactggacctcttccctctggtgtggcaaatcttgtcttcaaccaggagagtgca |
55171606 |
T |
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| Q |
201 |
cgtgtttctcctgtgactggatcccattgaaccttct |
237 |
Q |
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| T |
55171607 |
cgtgtttctcctgtgactggatcccattgaaccttct |
55171643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 27724384 - 27724266
Alignment:
| Q |
33 |
tactctgtttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccag |
132 |
Q |
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||||||| |||| |||| | ||||||||| |||||| | ||||||||||||||| ||||||| || || |||||||||||||||||| ||||||| |
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| T |
27724384 |
tactctgattgagtaggctttccaagaggagagaggtagctcatccagtgacgaccaatgctttcaccattaacccaaatcattccttttgccatacctt |
27724285 |
T |
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| Q |
133 |
tcatcctgatggcaactgg |
151 |
Q |
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||| | |||||||||||| |
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| T |
27724284 |
ccattccgatggcaactgg |
27724266 |
T |
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