View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_48 (Length: 246)
Name: NF9869_low_48
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_48 |
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| [»] scaffold0394 (1 HSPs) |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 31439445 - 31439663
Alignment:
| Q |
16 |
cacttcattcaatacggtatcctccaaagcccgtcttattttctccagaaaggttttctttacaaatgttagatacgtcttctagtaatctttatgactc |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31439445 |
cacttcattcaataccgtatcctccaaagcccgtcttattttctccagaaaggttttctttacaaatgttagatacgtcttctagtaatctttatgactc |
31439544 |
T |
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| Q |
116 |
aaattcaattataatatatagagaaagaataaaatatgttcaacaaaatcgaaaatgttacgcaattgtaatgtgaggcgtgtgtat--tgttcgttttc |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31439545 |
aaattcaattata----atagagaaagaataaaatatgttcaacaaaatcgaaaatgttacgcaattgtaatgtgaggcgtgtgtattgtgttcgttttc |
31439640 |
T |
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| Q |
214 |
ttttttgacaatgtatacctttg |
236 |
Q |
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|||||| |||||||||||||||| |
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| T |
31439641 |
ttttttaacaatgtatacctttg |
31439663 |
T |
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Target: scaffold0394 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 1742 - 1696
Alignment:
| Q |
16 |
cacttcattcaatacggtatcctccaaagcccgtcttattttctcca |
62 |
Q |
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| T |
1742 |
cacttcattcaatacaatatcctccaaagcctatcttattttctcca |
1696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 1796 - 1750
Alignment:
| Q |
16 |
cacttcattcaatacggtatcctccaaagcccgtcttattttctcca |
62 |
Q |
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| T |
1796 |
cacttcattcaatacaatatcctccaaagcctatcttattttctcca |
1750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 15063792 - 15063838
Alignment:
| Q |
16 |
cacttcattcaatacggtatcctccaaagcccgtcttattttctcca |
62 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
15063792 |
cacttcattcaatacaatatcctccaaagcctatcttattttctcca |
15063838 |
T |
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