View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_51 (Length: 240)
Name: NF9869_low_51
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 10233964 - 10233757
Alignment:
| Q |
18 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
117 |
Q |
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| T |
10233964 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
10233865 |
T |
|
| Q |
118 |
atattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10233864 |
atattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgatattgttctgaactgt |
10233765 |
T |
|
| Q |
218 |
actctgtg |
225 |
Q |
| |
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|||||||| |
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| T |
10233764 |
actctgtg |
10233757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 8336848 - 8336641
Alignment:
| Q |
18 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336848 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
8336749 |
T |
|
| Q |
118 |
atattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgt |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336748 |
atattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgt |
8336649 |
T |
|
| Q |
218 |
actctgtg |
225 |
Q |
| |
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|||||||| |
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|
| T |
8336648 |
actctgtg |
8336641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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