View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_52 (Length: 240)
Name: NF9869_low_52
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 25742099 - 25741877
Alignment:
| Q |
18 |
gtaagccctaccaatacatccaatgctaccaaaacaaaaaactcattccaccaatactccccaacgtttcatttcagtccatatccggtggccggagctt |
117 |
Q |
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| T |
25742099 |
gtaagccctaccaatacatccaatgctaccaaaacaaaaaactcattccaccaatactccccaacgtttcatttcagtccatatccggtggccggagctt |
25742000 |
T |
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| Q |
118 |
cttctgcggcctccggtctaatggactcagcctacactgttggaacacaaggacacggaagtcttttctcaaacctaaaagggtgtatcatagtgaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741999 |
cttctgcggcctccggtctaatggactcagcctacactgttggaacacaaggacacggaagtcttttctcaaacctaaaagggtgtatcatagtgaaaat |
25741900 |
T |
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| Q |
218 |
gttgagttgagtgatgtatctgt |
240 |
Q |
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||| |||||| ||||||| |||| |
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| T |
25741899 |
gttcagttgaatgatgtagctgt |
25741877 |
T |
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