View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_58 (Length: 227)
Name: NF9869_low_58
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 43576576 - 43576781
Alignment:
| Q |
1 |
tgaaggtcttgataatggtgaagtctcttatggggtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcagtgagatag |
100 |
Q |
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| T |
43576576 |
tgaaggtcttgataatggtgaagtctcttatggagtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcattgagatag |
43576675 |
T |
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| Q |
101 |
ctgcagatttccaattgacagtgttgttattgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcagatgaaataacaa |
200 |
Q |
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| T |
43576676 |
c---agatttccaattgacagtgttgttattgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcagataaaataacaa |
43576772 |
T |
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| Q |
201 |
ccttacatt |
209 |
Q |
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||||||||| |
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| T |
43576773 |
ccttacatt |
43576781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 32247508 - 32247711
Alignment:
| Q |
1 |
tgaaggtcttgataatggtgaagtctcttatggggtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcagtgagatag |
100 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
32247508 |
tgaaggtcttgataatgatgaagtctcttatggagtttgtagaa-gtttttcatgttgcatttcctgctatagaagtgtttgcaataatcattgcgatag |
32247606 |
T |
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| Q |
101 |
ctgcagatttccaattgacagtgttgttattgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcagatgaaataacaa |
200 |
Q |
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| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
32247607 |
c---agatttccaattgacagttttgttattaaatcttgctt-gatttctagcaaaccagatgctgttaaataagttgatcaaagcagataaaattacaa |
32247702 |
T |
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| Q |
201 |
ccttacatt |
209 |
Q |
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| T |
32247703 |
ccttacatt |
32247711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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