View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_59 (Length: 227)
Name: NF9869_low_59
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_59 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28521757 - 28521539
Alignment:
| Q |
1 |
tgcttcattgttaattcttttgctcataggtttggcttcataaagattgtaaacaagttagtcatgtcaaattgtgaattttttagtttatgacatgaat |
100 |
Q |
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| T |
28521757 |
tgcttcattgttaattcttttgctcataggtttggcttcataaagattgtaaacaagttagtcatgtcaaattgtga--------gtttatgacatgaac |
28521666 |
T |
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| Q |
101 |
aattcaactaacacaagtgtaaataagctttggatcaatttgtacaagattnnnnnnngtgatatttagttatttagcaacaataatctcaccagtggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
28521665 |
aattcaactaacacaagtgtaaataagctttggatcaatttgtacaagattaaaaaaagtaatatttagttatttagcaacaataatctcaccagtggtg |
28521566 |
T |
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| Q |
201 |
ataattgcagatctgattgcagcagga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28521565 |
ataattgcagatctgattgcagcagga |
28521539 |
T |
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