View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_6 (Length: 527)
Name: NF9869_low_6
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 3567114 - 3566594
Alignment:
| Q |
1 |
atcacattaaaactccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagcaaaaagtatgttat |
100 |
Q |
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| T |
3567114 |
atcacattaaaaatccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagcaaaaagtatgttat |
3567015 |
T |
|
| Q |
101 |
taacttgaacatctagcaaaagagattagttgtc-agaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaaccatgattgattag |
199 |
Q |
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| T |
3567014 |
taacttgaacatctagcaaaagagattagttgtctagaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaaccatgactgattag |
3566915 |
T |
|
| Q |
200 |
tgatgtctctattcaaccttctttatgtgcttatattgattcccttactattggcccaagtgtattcaactccattggcaggcaaatgaactaaagcatt |
299 |
Q |
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| T |
3566914 |
tgatgtctctatccaaccttctttatgtgcttatattgattcccttaccattggctcaagtgtattcaacaccattggcaggcaaatgaactaaagcatt |
3566815 |
T |
|
| Q |
300 |
tctgtcgatccaagacttaaactcttccataggtgacctcgtaggagtgattcttcacctatgctcatgagctccaataatagagttaaaatcacatatg |
399 |
Q |
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| T |
3566814 |
tctgtcgatacaagacttaaactcttccataggtgacctggtaggagtgattcttcacctatgctcatgagctccaataatagagttaaaatcacatatg |
3566715 |
T |
|
| Q |
400 |
aagcaccatgggaaggcatattgagattgcaaaagagat-nnnnnnnttccataattgtcttctttttctgtaatctgtggaagcatacacaacagatat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566714 |
aagcaccatgggaaggcatattgagattgcaaaagagataaaaaaaattccataattgtcttctttttctgtaatctgtggaagcatacacaacagatat |
3566615 |
T |
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| Q |
499 |
aacaaaagtttgatgtccatc |
519 |
Q |
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| T |
3566614 |
aacaaaagtttggtgtccatc |
3566594 |
T |
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