View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_60 (Length: 223)
Name: NF9869_low_60
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 42141904 - 42142076
Alignment:
| Q |
12 |
tagcataggtacagaaaaaggaaagcctatttttgccttacatattatagacctcacagaactctgatcatatattaaagccaaaccattgttattaatt |
111 |
Q |
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| T |
42141904 |
tagcataggtacagaaaaaggaaagcctatttttgccttacatattatagacctcacagaactctgatcatatattaaagccaaaccattgttattaatt |
42142003 |
T |
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| Q |
112 |
atcatgactttaaagcttcgagaactgtgataagaagatatattgtgtgttctttcttactttcttatattct |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42142004 |
atcatgactttaaagcttcgagaactgtgataagaagatatattgtgtgttctttcttactttcttatattct |
42142076 |
T |
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