View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_7 (Length: 510)
Name: NF9869_low_7
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Complemental strand, 37755565 - 37755083
Alignment:
| Q |
6 |
agaagcaaaggaacatctttgcaaggaagaacagaagtggcaagattagcgcgtttgataatagtttgaacaaaatggtcatccattcttaattctccat |
105 |
Q |
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| T |
37755565 |
agaaccaaaggaacatctttgcaaggaagaacagaagcggcaagattagcgcgtttgataatagtttgaacaaaatggtcatccattcttaattctccat |
37755466 |
T |
|
| Q |
106 |
caatgttgtcttctataatcacaaacgatttcgtttcctttataaatgaaagtaatctacgaatttcgtgttcttgtgatgcattcaacttcctcaagac |
205 |
Q |
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| T |
37755465 |
caatgttgtcttctatcatcacaaacgatttcgtttcctttataaatgaaagtaatctacgaatttcgtgttcttgtgatgcattcaacttccttaagac |
37755366 |
T |
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| Q |
206 |
ttgaagtggaaatgcgactgagatttttacttctttacttatgtgaagatcactgagaattgaatgaattgatttaagagcatgcataatcaaaggcatc |
305 |
Q |
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| T |
37755365 |
ttgaagtggaaatgcgaccgagatttttacttctttacttatgtgaagatcactgagaattgaatgaattgatttaagagcatgcataatcaaaggcagc |
37755266 |
T |
|
| Q |
306 |
tcattttgtaataagcactcacttccacacctaacaatgatgcttttgatgtttaaatgtggaagaaagttcactagttgagcttttagctcagaaactg |
405 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37755265 |
tcattttgtaataagcactcacttccacagctaacaatgatgcttttgatgtttaaatgtggaagaaagttcactagttgagcttttagctcagaaactg |
37755166 |
T |
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| Q |
406 |
ctgaagggtttgaagtaatgaatttttcaacttggcttttgtttaagtagagatcaactaacacttttgagttggtaagagtg |
488 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37755165 |
ctgaaggttttgaagtaatgaatttttcaacttggcttttgtttaagtagagatcaactaacagttttgagttggtaagagtg |
37755083 |
T |
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