View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9869_low_8 (Length: 501)
Name: NF9869_low_8
Description: NF9869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9869_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 122 - 483
Target Start/End: Original strand, 35673270 - 35673631
Alignment:
| Q |
122 |
tttcatcactcacaccagaaaaactcatctcctccatttctcaacttggttttattcaattcactgatcactcagtttcttcaaaactcgccaacttggc |
221 |
Q |
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| T |
35673270 |
tttcatcactcacaccagaaaaactcatctcctccatttctcaacttggttttattcaactcactgatcactcagtttcttcaaaacttgccaacttggc |
35673369 |
T |
|
| Q |
222 |
tgagtcagagtcactcaaactcttcaacctttcacatgatcaaaaagaatcattcttccctcaaaactggcctttcggttacgaaggtgacaacgacaac |
321 |
Q |
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| T |
35673370 |
tgagtcagagtcactcaaactcttcaacctttcacatgatcaaaaagaatcattcttccctcaaaactggcctttcggttacgaaggtgacaacgacaac |
35673469 |
T |
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| Q |
322 |
gacgaagaaaaactcgttgagtcgttccggttccagttcgactcgttgtgttcaaccgagtcgaaccagataaaactagaatcactcagcgagtttgcat |
421 |
Q |
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| T |
35673470 |
gacgaagaaaaactcgttgagtcgttccggttccagttcgactcgttgtgttcaaccgagtcgaaccagataaaactagaatcactcagcgagtttgcat |
35673569 |
T |
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| Q |
422 |
gtgcacttgagaaactaggtttgaatattattgatgtgttgatgaatggtttgggggttgag |
483 |
Q |
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| T |
35673570 |
gtgcacttgagaaactaggtttgaatattattgatgtgttgatgaatggtttgggggttgag |
35673631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35673149 - 35673195
Alignment:
| Q |
1 |
ctctcaacttccaccgctgctgatgcactctcccgcctcctccaccg |
47 |
Q |
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| T |
35673149 |
ctctcaacttccaccgctgctgatgcactctcccgcctcctccaccg |
35673195 |
T |
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