View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_high_1 (Length: 811)
Name: NF9870_high_1
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 42039369 - 42038845
Alignment:
| Q |
1 |
atatcatgggtgattgatgccacgacactttctggtatacaattttctgcattaacatatagtcaaaa-------ttaatactcattcacttccaattag |
93 |
Q |
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| T |
42039369 |
atatcatgggtgattgatgccacaacactttctggtatacaattttctgcattaacatatagtcaaaaatcaaaattaatactcgttcacttccaattag |
42039270 |
T |
|
| Q |
94 |
ccaaactcttagagaaatgaacaaacattgtatcaaaatttgttatgaaatattttattgattcgtattatttgtcactttagaatatnnnnnnntatta |
193 |
Q |
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| T |
42039269 |
ccaaactcttagagaaatgaacaaacattgtatcaaaatttgttatgaaatattttattgattcgttttatttgtcactttagaatataaaaaaatatta |
42039170 |
T |
|
| Q |
194 |
agagtaggatggaacctgcggctattcctagaagatcgtcttcagatatgattgctctaggaattttttgagcaattttattttcccacaaagaagcaag |
293 |
Q |
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| T |
42039169 |
agagtaggatggaacctgcggctattcctagaagatcgtcttcagagacgattgctctaggaatttttcgagcaattttattttcccacaaagaagcaag |
42039070 |
T |
|
| Q |
294 |
ctcattcatgctgtaacagttggtagagggtcgaaaatgaacacttttgttgattgttctttcatcatcaacaaccttcattgtgaacttgccaatatca |
393 |
Q |
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| T |
42039069 |
ctcattcatgctgtaacagttggtagagggtcgaaaatgaacacttttgttgattgttctttcatcatcaacaaccttcattgtgaacttgccaatatca |
42038970 |
T |
|
| Q |
394 |
tagccatcaacaaagtaagctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggta |
493 |
Q |
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| T |
42038969 |
tagccatcaacaaagtacgctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggta |
42038870 |
T |
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| Q |
494 |
catgttcagtatcacactgactaag |
518 |
Q |
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| T |
42038869 |
catgttcagtatcacagtgactaag |
42038845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 491 - 805
Target Start/End: Complemental strand, 42038840 - 42038526
Alignment:
| Q |
491 |
gtacatgttcagtatcacactgactaagtgagtgactttgccacaatcacatgggctcaacgtgattctggcaaaaccaccgtgatatcagacacgtact |
590 |
Q |
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| T |
42038840 |
gtacatgttcagtatcccagtgactaagtcagtgactttgccacaatcacatcggctcaacgtgattctggcaaaaccactgtgatatcagacacgtact |
42038741 |
T |
|
| Q |
591 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
690 |
Q |
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| T |
42038740 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
42038641 |
T |
|
| Q |
691 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgctaggcctggct |
790 |
Q |
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| T |
42038640 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgcaaggcctggct |
42038541 |
T |
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| Q |
791 |
ccacaggttctgctc |
805 |
Q |
| |
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||||||| ||||||| |
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| T |
42038540 |
ccacaggatctgctc |
42038526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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