View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_high_2 (Length: 541)
Name: NF9870_high_2
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 6 - 526
Target Start/End: Original strand, 46617581 - 46618101
Alignment:
| Q |
6 |
agaagcagagaaccctgttttaattatctcaataacaagcgaatttgcaaacccttaaacaaataaatatcatcaaggctcaacaatagttctacaataa |
105 |
Q |
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| T |
46617581 |
agaaacagagaaccctgttttaattatctcaataacaagcgaatttgcaaacccttaaacaaataaatatcatcaaggctcaacaatagttctacaataa |
46617680 |
T |
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| Q |
106 |
ggacaatgaggatgtgtttcaagccaagggagaagacatgctgaatgatacttatgtgagcaagaaagattcataacctcttcatcctgctgaaaatctt |
205 |
Q |
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| T |
46617681 |
ggacaatgaggatgtgtttcaagccaagggagaagacatgctgaatgatacttatgtgagcaagaaagattcataacctcttcatcctgctgaaaatctt |
46617780 |
T |
|
| Q |
206 |
ctaagcacacagcacaaatttttctctctttcttaaatttgttgccacgtaataaccatgaactttctagtaacttcctacctaatcctgcatctttctt |
305 |
Q |
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| T |
46617781 |
ctaagcacacagcacaaatttttctctctttcttaaatttgttgccacgtaataaccatgaactttctagtaacttcctacctaatcctgcatctttctt |
46617880 |
T |
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| Q |
306 |
ttggaattcttttccttcttttttgggattgtgttcacttgacctgtcataagaaaacgagcaaattaatcattaattagtgtaagatgaaacaagcaaa |
405 |
Q |
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| T |
46617881 |
ttggaattcttttccttcttttttgggattgtgttcacttgacctgtcataagaaaacgagcaaattaatcattaattagtgtaagatgacacaagcaaa |
46617980 |
T |
|
| Q |
406 |
ataatagttctgccttaccacgaatagttcgggaccttccgagtttgattcctgatgaaaatattttttggtcaaattttacttacttttcgaccgaact |
505 |
Q |
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| T |
46617981 |
ataatagttctgccttaccatgaatagttcgggacattccaagtttgattcctgatgaaaatattttttgatcaaattttacttacttttcgaccgaatt |
46618080 |
T |
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| Q |
506 |
tcggtttactagggtcttttt |
526 |
Q |
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| T |
46618081 |
ttagtttactagggtcttttt |
46618101 |
T |
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