View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_10 (Length: 394)
Name: NF9870_low_10
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 8284971 - 8284593
Alignment:
| Q |
1 |
caacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgt |
100 |
Q |
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| T |
8284971 |
caacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgt |
8284872 |
T |
|
| Q |
101 |
catggcattaggcactacttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcagtagggatgcgaaaa |
200 |
Q |
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| T |
8284871 |
catggcattaggcactacttcattaatatgattctgcacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggttccagtaggggtttgaaaa |
8284772 |
T |
|
| Q |
201 |
taagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatcccatcattagcattagagtatccaatattgttcgaaatta |
300 |
Q |
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| T |
8284771 |
taagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatcccatcattagcattggagaatccgatattgttcgaaatta |
8284672 |
T |
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| Q |
301 |
caatttcatcgggagaggctttttgatgaccagaagaagatgatgatgaggagttgggtggtgatgtgagtgtttgatg |
379 |
Q |
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| T |
8284671 |
caatttcatcgggagaagctttttgatgaccagaagaagatgatgatgatgagttgggtggtgatgtgagtgtttgatg |
8284593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 34694959 - 34694753
Alignment:
| Q |
66 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
162 |
Q |
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| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
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| Q |
163 |
taggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccc |
262 |
Q |
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| T |
34694859 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatccc |
34694760 |
T |
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| Q |
263 |
atcatta |
269 |
Q |
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||||||| |
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| T |
34694759 |
atcatta |
34694753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 34687001 - 34686910
Alignment:
| Q |
98 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcag |
186 |
Q |
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||||||| ||||| ||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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