View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_11 (Length: 384)
Name: NF9870_low_11
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 17277734 - 17277371
Alignment:
| Q |
16 |
catgcatggtagaagccatcaaagtcttgaatcaaaagattaaccatttaagtagaagctaaaataatcgaagtcatttgtttcttataaattactgcat |
115 |
Q |
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| T |
17277734 |
catgcatggtagaagccatcaaagtcttgaatcaaaagattaaccatttaagtagaagctaaaataatcgaagtcatttgtttcttataaattactgcat |
17277635 |
T |
|
| Q |
116 |
tactaatatttccacactaccaaatcaacaaaaactttaaaaacannnnnnnnctttctattttgtaagaagtaattctttgttagggtttagtgtgtga |
215 |
Q |
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| T |
17277634 |
tactaatatttccacactaccaaatcaacaaaaactttaaaaacattttttttctttctattttgtaagaagtaattctttgttagggtttagtgtgtga |
17277535 |
T |
|
| Q |
216 |
aacctcggcggcatctttatagtacataaacggaggcaacctttctcttccttttgctccgggcaagcctcccggtcatgaggccactgtaactaccacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17277534 |
aacctcggcggcatctttatagtacataaacggaggcaacctttctcttccttttgctccgggcaagcctcccggtcatgaggccactgtaactaccacc |
17277435 |
T |
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| Q |
316 |
agaagtacggccaaacctcccatttagaggccacaccttccaaaatctttcttcctttgcttct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17277434 |
agaagtacggccaaacctcccatttagaggccacaccttccaaaatctttcttcctttgtttct |
17277371 |
T |
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