View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9870_low_12 (Length: 369)
Name: NF9870_low_12
Description: NF9870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9870_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 7738283 - 7738589
Alignment:
| Q |
1 |
ttttttcaccaaaaatcacctaaaccattaatataatatcatattagagcccttttattggtccaattggtgtagttaagatatgacaatcaatcaatga |
100 |
Q |
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| T |
7738283 |
ttttttcaccaaaaatcacctaaaccattaatataatatcatattagagcccttttattggtccaattggtgtagttaagatatgacaatgaatcaatga |
7738382 |
T |
|
| Q |
101 |
tttcttccaaaaacaactccacgttttgtcaagtctagggcttaatatatgttgaatttgatgaatatgccctaagacaaccccatgatgtaagaaacta |
200 |
Q |
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| T |
7738383 |
tttcttccaaaaacaactccacgttttgtcaagtctagggcttaatatatgttgaatttgatgaatatgccataagacaaccccatgatgtgagaaacta |
7738482 |
T |
|
| Q |
201 |
gccagtgtgtcataacgatgaaatgaggc-aaccctcatccacattcaacttnnnnnnntcttcgctaaatagatagtaaattccttaatcaataaattt |
299 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7738483 |
gccagtgtgtcataacgatgaaatgaggcaaaccctcatccacattcaacttaaaaaaatcttcgctaaatagatagtaaattccttaatcactaaattt |
7738582 |
T |
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| Q |
300 |
gtctcta |
306 |
Q |
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||||||| |
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| T |
7738583 |
gtctcta |
7738589 |
T |
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